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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4947 and Pf6N2E2_4948 are separated by 12 nucleotides
Pf6N2E2_4948 and Pf6N2E2_4949 are separated by 195 nucleotides
Pf6N2E2_4949 and Pf6N2E2_4950 are separated by 1 nucleotides
Pf6N2E2_4950 and Pf6N2E2_4951 are separated by 201 nucleotides
Pf6N2E2_4947 - FIG00954030: hypothetical protein, at 5,702,917 to 5,703,618
_4947
Pf6N2E2_4948 - Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1, at 5,703,631 to 5,704,788
_4948
Pf6N2E2_4949 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 5,704,984 to 5,705,916
_4949
Pf6N2E2_4950 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 5,705,918 to 5,706,538
_4950
Pf6N2E2_4951 - FIG00955422: hypothetical protein, at 5,706,740 to 5,707,183
_4951
Group
Condition
Pf6N2E2
_4947
Pf6N2E2
_4948
Pf6N2E2
_4949
Pf6N2E2
_4950
Pf6N2E2
_4951
stress
tellurite 0.005 M
-0.6
-0.8
+0.0
+0.0
-0.4
stress
Bile salts 0.0125 M
-0.4
-0.2
+0.3
+0.3
-1.5
stress
Cobalt chloride 0.6 mM
-0.4
-0.1
-0.0
-0.6
-0.0
carbon source
octanoate (C)
-0.3
-0.0
-0.2
+0.2
-0.7
stress
Nickel (II) chloride 1 mM
-0.2
+0.0
-0.5
-0.6
+0.3
stress
Nickel (II) chloride 1.5 mM
-0.1
+0.0
-0.6
-0.5
+0.2
stress
periodate 0.00125 M
-0.5
-0.2
+0.3
+0.0
-0.4
stress
Cobalt chloride 0.6 mM
-0.5
-0.1
+0.0
-0.7
+0.5
motility
outer cut, LB soft agar motility assay
+0.3
-0.1
-0.3
-0.2
-0.4
stress
bismuth(III) chloride 0.000025 M
-0.2
+0.0
+0.2
-0.3
-0.5
stress
Nickel (II) chloride 1.5 mM
-0.1
+0.0
-0.7
-0.2
+0.4
stress
Nickel (II) chloride 1.5 mM
+0.0
-0.1
-0.6
-0.3
+0.4
nitrogen source
L-Serine (N)
-0.1
-0.1
-0.2
-0.5
+0.6
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.0
+0.1
+0.4
-0.4
-0.4
stress
Zinc chloride 0.0000015625 M
-0.3
+0.2
+0.0
-0.4
+0.2
stress
Cobalt chloride 0.6 mM
-0.4
+0.0
-0.1
-0.3
+0.4
stress
sodium iodate 0.005 M
-0.2
+0.1
-0.0
+0.5
-0.7
carbon source
Ying_Nucleobase14 rep B; time point 1
-0.5
+0.1
-0.1
+0.1
+0.5
nitrogen source
Glycine (N)
+0.1
-0.2
+0.3
+0.3
-0.3
carbon source
RCH2_defined
+0.3
+0.4
-0.0
-0.2
-0.2
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.3
-0.0
-0.3
-0.4
+0.7
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+0.3
+0.1
-0.0
-0.5
+0.5
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
+0.1
+0.1
-0.5
+0.1
+0.6
stress
RCH2 defined with Cobalt chloride 0.02 mM
+0.3
+0.2
+0.1
-0.4
+0.2
stress
RCH2 defined with Cobalt chloride 0.02 mM
+0.4
+0.2
+0.2
-0.6
+0.3
stress
Hydroxide 0.05 M
+0.3
-0.2
-0.1
+0.2
+0.3
stress
Cadmium chloride hemipentahydrate 0.00005 M
+0.4
+0.3
+0.2
-0.0
-0.3
stress
Nickel (II) chloride 0.0025 M
-0.1
+0.3
-0.1
+0.3
+0.4
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.1
+0.0
-0.1
-0.3
+0.9
stress
deoxycholate 0.0125 M
+0.4
-0.2
-0.0
+0.3
+0.3
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