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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_4905 and Pf6N2E2_4906 overlap by 15 nucleotides
Pf6N2E2_4906 and Pf6N2E2_4907 are separated by 149 nucleotides
Pf6N2E2_4907 and Pf6N2E2_4908 overlap by 8 nucleotides
Pf6N2E2_4908 and Pf6N2E2_4909 are separated by 182 nucleotides
Pf6N2E2_4905 - Lhr-like helicases, at 5,659,301 to 5,663,584
_4905
Pf6N2E2_4906 - hypothetical protein, at 5,663,570 to 5,663,692
_4906
Pf6N2E2_4907 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 5,663,842 to 5,664,711
_4907
Pf6N2E2_4908 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 5,664,704 to 5,665,633
_4908
Pf6N2E2_4909 - Outer membrane protein W precursor, at 5,665,816 to 5,666,514
_4909
Group
Condition
Pf6N2E2
_4905
Pf6N2E2
_4906
Pf6N2E2
_4907
Pf6N2E2
_4908
Pf6N2E2
_4909
carbon source
Ying_OrganicAcid7 rep B; time point 3
+0.2
-0.8
-3.1
+0.0
-0.1
lb
LB no stress 24 hours
-0.1
+0.2
-0.4
-3.0
+0.0
lb
LB no stress 24 hours
-0.1
-0.1
-0.4
-2.5
-0.0
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.1
-0.0
-2.9
-0.2
-0.1
stress
Nickel (II) chloride 0.0025 M
+0.0
-0.0
-0.0
-2.9
-0.1
carbon source
Ying_OrganicAcid7 rep A; time point 3
+0.0
-0.1
-3.1
+0.0
+0.1
stress
Calcium chloride 0.0125 M
+0.1
-0.0
-0.2
-3.1
+0.3
stress
bismuth(III) chloride 0.000025 M
-0.1
+0.1
-0.4
-2.7
+0.2
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.1
-0.4
-2.1
+0.0
-0.2
stress
Cerium(III) chloride 0.000195313 M
-0.2
+0.1
-0.3
-2.6
+0.2
stress
bismuth(III) chloride 0.000025 M
-0.0
-0.0
-0.2
-2.4
-0.0
stress
Calcium chloride 0.0125 M
+0.1
+0.2
-0.2
-2.9
+0.2
lb
LB no stress 24 hours
-0.1
+0.1
-0.5
-2.0
-0.0
stress
Nickel (II) chloride 0.0025 M
-0.2
+0.0
+0.0
-2.6
+0.3
stress
Cerium(III) chloride 0.000195313 M
-0.0
+0.0
-0.3
-2.2
-0.0
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.0
+0.1
-2.1
+0.1
-0.3
stress
Europium(III) chloride 0.000195313 M
+0.0
+0.2
-0.2
-2.3
+0.2
carbon source
Ying_OrganicAcid7 rep B; time point 2
-0.2
-0.1
-1.7
+0.3
-0.2
stress
DEANONOate 0.000625 M
-0.1
-0.2
-0.3
-1.6
+0.3
stress
Bile salts 0.0125 M
+0.1
-0.2
+0.3
-1.9
+0.4
stress
chromate 0.0000015625 M
-0.1
+0.0
+0.8
-1.8
+0.1
nitrogen source
nitrogen source nitrite 5mM
+0.3
-0.2
-1.5
+0.4
+0.2
stress
dimethyl sulfone 0.25 M
+0.2
+0.5
-1.6
+0.2
+0.0
stress
sodium bromide 0.0125 M
-0.1
+0.3
+0.8
-1.5
+0.0
stress
chromate 0.0000015625 M
+0.1
+0.2
+1.3
-1.4
-0.2
carbon source
octanoate (C)
+0.1
+0.2
+1.6
+0.1
+0.8
stress
Rifampicin 0.003 mg/ml
-0.1
-0.1
+2.4
+0.4
+0.1
carbon source
D-Galactose (C)
-0.2
+0.2
+3.0
+0.2
-0.2
carbon source
D-Galactose (C)
-0.2
+0.1
+3.5
-0.2
+0.1
stress
Fusidic 0.4 mg/ml
-0.1
+0.3
+2.6
+1.8
-0.2
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Pf6N2E2_4907
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