Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_484 and Pf6N2E2_485 are separated by 196 nucleotidesPf6N2E2_485 and Pf6N2E2_486 overlap by 1 nucleotidesPf6N2E2_486 and Pf6N2E2_487 are separated by 75 nucleotidesPf6N2E2_487 and Pf6N2E2_488 are separated by 58 nucleotides Pf6N2E2_484 - Aldose 1-epimerase, at 550,473 to 551,342 _484 Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819 _485 Pf6N2E2_486 - TRAP-type C4-dicarboxylate transport system, small permease component, at 552,819 to 553,346 _486 Pf6N2E2_487 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 553,422 to 554,390 _487 Pf6N2E2_488 - Gluconolactonase (EC 3.1.1.17), at 554,449 to 555,354 _488
Group Condition Pf6N2E2_484 Pf6N2E2_485 Pf6N2E2_486 Pf6N2E2_487 Pf6N2E2_488
nitrogen source nitrogen source nitrate 5mM +0.3 -0.5 -0.4 -0.2 -0.6
carbon source Ying_Others16 rep A; time point 3 -0.2 -0.5 +0.0 -0.6 -0.2
nitrogen source L-Arginine (N) -0.2 -0.6 -0.3 -0.2 -0.1
nitrogen source nitrogen source nitrate 20mM -0.1 -0.4 -0.3 -0.5 -0.2
nitrogen source nitrogen source nitrite 1mM -0.4 +0.1 -0.3 -0.3 -0.5
denitrifying Nitrate reduction, replicate C -0.0 -0.5 -0.1 -0.2 -0.4
carbon source Ying_AminoAcid20 rep C; time point 3 -0.1 -0.6 +0.2 -0.5 -0.2
nitrogen source nitrogen source nitrite 0.5mM +0.0 +0.0 -0.2 -0.6 -0.4
stress Zinc chloride 0.0000015625 M -0.2 -0.0 +0.3 -1.2 +0.2
carbon source Ying_AminoAcid20 rep B; time point 3 -0.3 -0.3 +0.0 -0.6 +0.2
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.3 +0.4 -0.2 -0.4 -0.2
carbon source Carbon source Sucrose 5 mM -0.0 -0.8 -0.4 +0.4 +0.3
nitrogen source nitrogen source nitrite 5mM -0.2 +0.5 -0.2 -0.5 +0.2
stress deoxycholate 0.0125 M +0.4 -0.1 +0.0 -0.7 +0.1
nitrogen source L-Proline (N) -0.2 -0.2 -0.2 +0.6 -0.1
stress Chromium(III) Chloride Hexahydrate 0.000390625 M -0.2 -0.5 -0.0 +0.5 +0.2
stress sodium carbonate 0.0125 M +0.1 +0.3 -0.2 -0.4 +0.3
nitrogen source L-Serine (N) -0.1 -0.5 +0.0 +0.6 +0.1
carbon source Trisodium citrate (C) -0.0 -0.6 -0.0 +0.3 +0.4
nitrogen source Cytidine (N) -0.0 -0.4 -0.2 +0.7 +0.1
stress sodium iodate 0.005 M +0.1 +0.3 -0.1 -0.4 +0.4
stress Cobalt chloride 0.6 mM -0.2 -0.1 -0.2 +0.8 +0.1
carbon source D-Galactose (C) -0.2 -0.4 -0.0 +0.8 +0.3
stress Nickel (II) chloride 1 mM -0.4 -0.0 +0.1 +0.7 +0.2
stress Nickel (II) chloride 0.0025 M -0.2 +0.5 -0.3 +0.5 -0.0
motility outer cut, LB soft agar motility assay -0.3 +0.1 +0.1 +0.3 +0.5
stress Nickel (II) chloride 1 mM -0.1 +0.3 -0.2 +0.5 +0.3
stress Cobalt chloride 0.6 mM -0.2 +0.2 +0.0 +0.6 +0.3
carbon source D-Galactose (C) -0.1 -0.3 +0.5 +0.3 +0.5
carbon source propionate (C) +0.2 +0.3 +0.2 +0.2 +0.4
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