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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_484 and Pf6N2E2_485 are separated by 196 nucleotides
Pf6N2E2_485 and Pf6N2E2_486 overlap by 1 nucleotides
Pf6N2E2_486 and Pf6N2E2_487 are separated by 75 nucleotides
Pf6N2E2_487 and Pf6N2E2_488 are separated by 58 nucleotides
Pf6N2E2_484 - Aldose 1-epimerase, at 550,473 to 551,342
_484
Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819
_485
Pf6N2E2_486 - TRAP-type C4-dicarboxylate transport system, small permease component, at 552,819 to 553,346
_486
Pf6N2E2_487 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 553,422 to 554,390
_487
Pf6N2E2_488 - Gluconolactonase (EC 3.1.1.17), at 554,449 to 555,354
_488
Group
Condition
Pf6N2E2
_484
Pf6N2E2
_485
Pf6N2E2
_486
Pf6N2E2
_487
Pf6N2E2
_488
nitrogen source
nitrogen source nitrate 5mM
+0.3
-0.5
-0.4
-0.2
-0.6
carbon source
Ying_Others16 rep A; time point 3
-0.2
-0.5
+0.0
-0.6
-0.2
nitrogen source
L-Arginine (N)
-0.2
-0.6
-0.3
-0.2
-0.1
nitrogen source
nitrogen source nitrate 20mM
-0.1
-0.4
-0.3
-0.5
-0.2
nitrogen source
nitrogen source nitrite 1mM
-0.4
+0.1
-0.3
-0.3
-0.5
denitrifying
Nitrate reduction, replicate C
-0.0
-0.5
-0.1
-0.2
-0.4
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.1
-0.6
+0.2
-0.5
-0.2
nitrogen source
nitrogen source nitrite 0.5mM
+0.0
+0.0
-0.2
-0.6
-0.4
stress
Zinc chloride 0.0000015625 M
-0.2
-0.0
+0.3
-1.2
+0.2
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.3
-0.3
+0.0
-0.6
+0.2
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.3
+0.4
-0.2
-0.4
-0.2
carbon source
Carbon source Sucrose 5 mM
-0.0
-0.8
-0.4
+0.4
+0.3
nitrogen source
nitrogen source nitrite 5mM
-0.2
+0.5
-0.2
-0.5
+0.2
stress
deoxycholate 0.0125 M
+0.4
-0.1
+0.0
-0.7
+0.1
nitrogen source
L-Proline (N)
-0.2
-0.2
-0.2
+0.6
-0.1
stress
Chromium(III) Chloride Hexahydrate 0.000390625 M
-0.2
-0.5
-0.0
+0.5
+0.2
stress
sodium carbonate 0.0125 M
+0.1
+0.3
-0.2
-0.4
+0.3
nitrogen source
L-Serine (N)
-0.1
-0.5
+0.0
+0.6
+0.1
carbon source
Trisodium citrate (C)
-0.0
-0.6
-0.0
+0.3
+0.4
nitrogen source
Cytidine (N)
-0.0
-0.4
-0.2
+0.7
+0.1
stress
sodium iodate 0.005 M
+0.1
+0.3
-0.1
-0.4
+0.4
stress
Cobalt chloride 0.6 mM
-0.2
-0.1
-0.2
+0.8
+0.1
carbon source
D-Galactose (C)
-0.2
-0.4
-0.0
+0.8
+0.3
stress
Nickel (II) chloride 1 mM
-0.4
-0.0
+0.1
+0.7
+0.2
stress
Nickel (II) chloride 0.0025 M
-0.2
+0.5
-0.3
+0.5
-0.0
motility
outer cut, LB soft agar motility assay
-0.3
+0.1
+0.1
+0.3
+0.5
stress
Nickel (II) chloride 1 mM
-0.1
+0.3
-0.2
+0.5
+0.3
stress
Cobalt chloride 0.6 mM
-0.2
+0.2
+0.0
+0.6
+0.3
carbon source
D-Galactose (C)
-0.1
-0.3
+0.5
+0.3
+0.5
carbon source
propionate (C)
+0.2
+0.3
+0.2
+0.2
+0.4
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