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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4800 and Pf6N2E2_4801 are separated by 113 nucleotides
Pf6N2E2_4801 and Pf6N2E2_4802 are separated by 300 nucleotides
Pf6N2E2_4802 and Pf6N2E2_4803 are separated by 32 nucleotides
Pf6N2E2_4803 and Pf6N2E2_4804 overlap by 1 nucleotides
Pf6N2E2_4800 - yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB)
(from data)
, at 5,549,288 to 5,550,559
_4800
Pf6N2E2_4801 - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB)
(from data)
, at 5,550,673 to 5,552,595
_4801
Pf6N2E2_4802 - Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1), at 5,552,896 to 5,553,225
_4802
Pf6N2E2_4803 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 5,553,258 to 5,554,133
_4803
Pf6N2E2_4804 - ApaG protein, at 5,554,133 to 5,554,513
_4804
Group
Condition
Pf6N2E2
_4800
Pf6N2E2
_4801
Pf6N2E2
_4802
Pf6N2E2
_4803
Pf6N2E2
_4804
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-2.6
-2.3
-0.9
-2.7
-0.4
carbon source
propionate (C)
-2.1
-2.1
-0.1
-3.8
+0.5
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-2.2
-1.9
-0.7
-1.9
-0.7
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-1.9
-1.7
-0.6
-2.7
-0.4
carbon source
Ying_OrganicAcid7 rep B; time point 3
-2.3
-2.3
-0.4
-1.0
-1.0
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-1.8
-1.6
-0.5
-2.6
-0.5
carbon source
Ying_OrganicAcid7 rep C; time point 3
-2.3
-2.4
-0.4
-0.5
-1.0
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-1.6
-1.3
-0.6
-2.3
-0.8
stress
acetate 80 mM
+0.0
+0.0
-0.1
-5.7
-0.4
carbon source
L-Isoleucine (C)
-0.5
-0.5
-0.4
-4.3
-0.1
carbon source
Ying_OrganicAcid7 rep A; time point 3
-2.0
-2.4
-0.5
-0.2
-0.4
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-1.4
-1.2
+0.0
-2.1
-0.7
carbon source
D-Sorbitol (C)
-0.4
-0.4
-0.0
-4.1
-0.4
nitrogen source
nitrogen source nitrate 20mM
-0.2
-0.1
-0.3
-4.6
-0.2
resistance
20 mM putrescine
-1.5
-1.3
-0.2
-1.7
-0.5
stress
5-Hydroxymethylfurfural 10 mM
+0.1
-0.0
-0.3
-5.1
+0.1
carbon source
L-Isoleucine (C)
-0.5
-0.4
-0.4
-3.9
-0.1
nitrogen source
nitrogen source nitrite 5mM
-0.4
-0.4
+0.3
-4.5
-0.2
nitrogen source
nitrogen source nitrite 0.5mM
-0.2
-0.4
+0.1
-4.7
+0.0
carbon source
L-Alanine (C)
-0.2
-0.3
-0.3
-4.2
-0.1
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.1
-0.1
+0.1
-4.8
-0.2
nitrogen source
Uridine (N)
-0.4
-0.3
-0.2
-3.9
-0.3
carbon source
propionate (C)
-2.5
-1.6
-0.4
-0.7
+0.2
nitrogen source
nitrogen source nitrite 0.5mM
-0.1
-0.0
-0.1
-4.7
-0.1
carbon source
Carnitine Hydrochloride (C)
-0.1
+0.0
-0.4
-4.3
-0.2
nitrogen source
nitrogen source nitrite 1mM
-0.2
-0.3
-0.1
-4.8
+0.6
nitrogen source
L-Glutamic (N)
-0.3
-0.1
-0.5
-4.0
+0.1
motility
inner cut, LB soft agar motility assay
-0.2
-0.2
-0.2
-3.6
+0.8
stress
Cobalt chloride 0.6 mM
-0.0
+0.2
+1.0
+3.5
+0.6
stress
Cobalt chloride 0.6 mM
+0.1
+0.2
+0.8
+4.1
+0.5
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