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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4770 and Pf6N2E2_4771 are separated by 127 nucleotides
Pf6N2E2_4771 and Pf6N2E2_4772 overlap by 35 nucleotides
Pf6N2E2_4772 and Pf6N2E2_4773 overlap by 29 nucleotides
Pf6N2E2_4773 and Pf6N2E2_4774 overlap by 4 nucleotides
Pf6N2E2_4770 - Stress induced hydrophobic peptide, at 5,511,076 to 5,511,234
_4770
Pf6N2E2_4771 - Coenzyme PQQ synthesis protein F (EC 3.4.99.-), at 5,511,362 to 5,513,191
_4771
Pf6N2E2_4772 - Coenzyme PQQ synthesis protein E, at 5,513,157 to 5,514,326
_4772
Pf6N2E2_4773 - Coenzyme PQQ synthesis protein D, at 5,514,298 to 5,514,573
_4773
Pf6N2E2_4774 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 5,514,570 to 5,515,322
_4774
Group
Condition
Pf6N2E2
_4770
Pf6N2E2
_4771
Pf6N2E2
_4772
Pf6N2E2
_4773
Pf6N2E2
_4774
stress
Zinc chloride 0.0000015625 M
+0.6
+0.2
-0.2
-4.5
-0.1
carbon source
L-Phenylalanine (C)
+0.1
-0.2
-0.8
-2.1
-0.6
lb
LB no stress 48 hours
-0.0
-0.2
-0.0
-3.4
-0.0
stress
Nalidixic 0.004 mg/ml
-0.3
-0.2
-0.3
-2.7
-0.2
nitrogen source
L-Aspartic Acid (N)
-0.5
-0.1
-0.3
-2.0
-0.2
stress
antimonate 0.005 M
-0.2
-0.2
-0.3
-1.7
-0.5
stress
Chloride 600 mM
-0.3
-0.1
-0.2
-1.9
-0.4
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.0
+0.0
+0.2
-2.8
-0.1
stress
D-Cycloserine 0.12 mg/ml
-0.1
+0.0
+0.1
-2.5
+0.1
nitrogen source
nitrogen source nitrite 1mM
-0.2
+0.1
+0.1
-2.5
+0.1
nitrogen source
nitrogen source nitrate 5mM
+0.1
+0.0
-0.0
-2.3
+0.1
carbon source
octanoate (C)
-0.1
-0.1
+0.3
-2.0
-0.2
carbon source
Glycerol (C)
+0.0
-0.1
+0.4
-2.5
+0.2
motility
outer cut, LB soft agar motility assay
+0.3
+0.0
+0.4
-2.6
-0.0
stress
Aluminum chloride 4 mM
-0.3
+0.2
+0.2
-1.8
-0.1
lb
LB no stress 48 hours
+0.0
+0.2
+0.4
-1.8
+0.3
stress
deoxycholate 0.0125 M
+0.6
+0.1
-1.0
-0.6
+0.4
carbon source
D-Xylose (C)
-0.5
+0.3
+1.2
-0.3
+0.9
carbon source
Ying_Nucleobase14 rep C; time point 2
+0.4
-0.3
+0.5
+1.2
+0.5
carbon source
D-Xylose (C)
+0.1
+0.1
+1.4
+0.1
+0.9
carbon source
D-Alanine (C)
-0.2
-0.0
+1.8
-0.6
+1.8
carbon source
Tween 20 (C)
+0.1
+0.1
+1.1
+0.7
+0.9
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
+0.2
+2.2
+0.3
+1.7
carbon source
L-Histidine (C)
+0.0
+0.0
+2.2
+0.3
+2.0
carbon source
L-Histidine (C)
-0.0
+0.2
+2.3
+0.3
+1.8
carbon source
m-Inositol (C)
+0.2
-0.0
+2.2
+1.3
+1.9
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
+0.3
+2.6
+0.4
+2.3
carbon source
D-Fructose (C)
-0.1
+0.0
+3.5
+0.8
+3.0
carbon source
D-Galactose (C)
+0.6
+0.1
+3.2
+1.2
+2.7
carbon source
D-Galactose (C)
-0.0
+0.1
+3.7
+1.3
+3.3
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