Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_4770 and Pf6N2E2_4771 are separated by 127 nucleotidesPf6N2E2_4771 and Pf6N2E2_4772 overlap by 35 nucleotidesPf6N2E2_4772 and Pf6N2E2_4773 overlap by 29 nucleotidesPf6N2E2_4773 and Pf6N2E2_4774 overlap by 4 nucleotides Pf6N2E2_4770 - Stress induced hydrophobic peptide, at 5,511,076 to 5,511,234 _4770 Pf6N2E2_4771 - Coenzyme PQQ synthesis protein F (EC 3.4.99.-), at 5,511,362 to 5,513,191 _4771 Pf6N2E2_4772 - Coenzyme PQQ synthesis protein E, at 5,513,157 to 5,514,326 _4772 Pf6N2E2_4773 - Coenzyme PQQ synthesis protein D, at 5,514,298 to 5,514,573 _4773 Pf6N2E2_4774 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 5,514,570 to 5,515,322 _4774
Group Condition Pf6N2E2_4770 Pf6N2E2_4771 Pf6N2E2_4772 Pf6N2E2_4773 Pf6N2E2_4774
stress Zinc chloride 0.0000015625 M +0.6 +0.2 -0.2 -4.5 -0.1
carbon source L-Phenylalanine (C) +0.1 -0.2 -0.8 -2.1 -0.6
lb LB no stress 48 hours -0.0 -0.2 -0.0 -3.4 -0.0
stress Nalidixic 0.004 mg/ml -0.3 -0.2 -0.3 -2.7 -0.2
nitrogen source L-Aspartic Acid (N) -0.5 -0.1 -0.3 -2.0 -0.2
stress antimonate 0.005 M -0.2 -0.2 -0.3 -1.7 -0.5
stress Chloride 600 mM -0.3 -0.1 -0.2 -1.9 -0.4
carbon source Ying_AminoAcid20 rep C; time point 3 -0.0 +0.0 +0.2 -2.8 -0.1
stress D-Cycloserine 0.12 mg/ml -0.1 +0.0 +0.1 -2.5 +0.1
nitrogen source nitrogen source nitrite 1mM -0.2 +0.1 +0.1 -2.5 +0.1
nitrogen source nitrogen source nitrate 5mM +0.1 +0.0 -0.0 -2.3 +0.1
carbon source octanoate (C) -0.1 -0.1 +0.3 -2.0 -0.2
carbon source Glycerol (C) +0.0 -0.1 +0.4 -2.5 +0.2
motility outer cut, LB soft agar motility assay +0.3 +0.0 +0.4 -2.6 -0.0
stress Aluminum chloride 4 mM -0.3 +0.2 +0.2 -1.8 -0.1
lb LB no stress 48 hours +0.0 +0.2 +0.4 -1.8 +0.3
stress deoxycholate 0.0125 M +0.6 +0.1 -1.0 -0.6 +0.4
carbon source D-Xylose (C) -0.5 +0.3 +1.2 -0.3 +0.9
carbon source Ying_Nucleobase14 rep C; time point 2 +0.4 -0.3 +0.5 +1.2 +0.5
carbon source D-Xylose (C) +0.1 +0.1 +1.4 +0.1 +0.9
carbon source D-Alanine (C) -0.2 -0.0 +1.8 -0.6 +1.8
carbon source Tween 20 (C) +0.1 +0.1 +1.1 +0.7 +0.9
carbon source D-Glucosamine Hydrochloride (C) +0.2 +0.2 +2.2 +0.3 +1.7
carbon source L-Histidine (C) +0.0 +0.0 +2.2 +0.3 +2.0
carbon source L-Histidine (C) -0.0 +0.2 +2.3 +0.3 +1.8
carbon source m-Inositol (C) +0.2 -0.0 +2.2 +1.3 +1.9
carbon source D-Glucosamine Hydrochloride (C) +0.3 +0.3 +2.6 +0.4 +2.3
carbon source D-Fructose (C) -0.1 +0.0 +3.5 +0.8 +3.0
carbon source D-Galactose (C) +0.6 +0.1 +3.2 +1.2 +2.7
carbon source D-Galactose (C) -0.0 +0.1 +3.7 +1.3 +3.3
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