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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4713 and Pf6N2E2_4714 are separated by 217 nucleotides
Pf6N2E2_4714 and Pf6N2E2_4715 are separated by 153 nucleotides
Pf6N2E2_4715 and Pf6N2E2_4716 are separated by 195 nucleotides
Pf6N2E2_4716 and Pf6N2E2_4717 are separated by 308 nucleotides
Pf6N2E2_4713 - GbcA Glycine betaine demethylase subunit A, at 5,448,838 to 5,450,133
_4713
Pf6N2E2_4714 - GbcB Glycine betaine demethylase subunit B, at 5,450,351 to 5,451,517
_4714
Pf6N2E2_4715 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 5,451,671 to 5,452,711
_4715
Pf6N2E2_4716 - Membrane protein, putative, at 5,452,907 to 5,453,611
_4716
Pf6N2E2_4717 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 5,453,920 to 5,455,173
_4717
Group
Condition
Pf6N2E2
_4713
Pf6N2E2
_4714
Pf6N2E2
_4715
Pf6N2E2
_4716
Pf6N2E2
_4717
carbon source
Carnitine Hydrochloride (C)
-4.3
-4.4
+0.4
+0.1
-3.9
carbon source
Carnitine Hydrochloride (C)
-4.4
-4.3
+0.1
+0.2
-2.8
carbon source
Ying_Others16 rep A; time point 3
-0.8
-0.8
-0.5
+0.4
-1.8
carbon source
Ying_Others16 rep B; time point 3
-0.7
-0.7
-0.1
+0.3
-2.2
carbon source
Ying_Others16 rep C; time point 3
-0.7
-0.8
+0.2
+0.3
-2.2
carbon source
Ying_Others16 rep A; time point 2
-0.3
-0.6
-0.9
+0.4
-1.7
carbon source
Ying_Others16 rep C; time point 1
-0.2
-0.5
-1.0
-0.1
-1.0
carbon source
Ying_Others16 rep A; time point 1
-0.4
-0.4
-0.7
-0.0
-0.8
carbon source
Ying_Others16 rep B; time point 2
-0.0
-0.5
-0.6
+0.4
-1.5
carbon source
Carbon source D-Glucose 10 mM
-0.0
-0.2
-1.3
-0.1
-0.4
carbon source
Ying_all64 rep B; time point 3
-0.3
-0.5
-0.3
+0.2
-1.0
carbon source
Carbon source Sucrose 5 mM
-0.3
-0.2
-1.3
+0.2
-0.3
carbon source
Ying_all64 rep C; time point 3
-0.5
-0.5
-0.2
+0.3
-0.9
carbon source
Ying_all64 rep A; time point 3
-0.4
-0.5
-0.2
+0.1
-0.8
carbon source
Ying_Others16 rep C; time point 2
-0.0
-0.5
-0.1
+0.2
-1.2
stress
Magnesium chloride 0.125 M
+0.1
+0.2
-1.2
-0.1
-0.3
stress
Hydroxide 0.05 M
+0.1
-0.1
-0.7
-0.4
-0.2
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.3
-0.0
-1.1
-0.1
-0.2
stress
deoxycholate 0.0125 M
-0.1
+0.4
-1.1
+0.1
-0.3
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.1
-0.2
-0.4
+0.3
-0.4
stress
Cobalt chloride 0.6 mM
+0.1
-0.3
-1.0
+0.4
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 2
+0.1
+0.0
-0.6
+0.2
-0.4
motility
inner cut, LB soft agar motility assay
+0.1
+0.2
+0.2
-0.9
-0.0
stress
Bile salts 0.0125 M
-0.0
+0.2
-0.9
+0.2
+0.3
nitrogen source
Glycine (N)
-0.2
+0.2
+0.6
+0.1
-0.8
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.2
+0.1
-0.8
+0.4
+0.1
stress
antimonate 0.005 M
+0.5
+0.4
-1.0
+0.1
-0.1
lb
LB no stress 48 hours
+0.3
+0.3
-0.4
-0.2
+0.2
nitrogen source
nitrogen source nitrite 1mM
-0.3
+0.2
+0.8
+0.2
-0.0
nitrogen source
nitrogen source nitrite 1mM
+0.3
-0.0
+0.9
-0.1
-0.3
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