Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_4713 and Pf6N2E2_4714 are separated by 217 nucleotidesPf6N2E2_4714 and Pf6N2E2_4715 are separated by 153 nucleotidesPf6N2E2_4715 and Pf6N2E2_4716 are separated by 195 nucleotidesPf6N2E2_4716 and Pf6N2E2_4717 are separated by 308 nucleotides Pf6N2E2_4713 - GbcA Glycine betaine demethylase subunit A, at 5,448,838 to 5,450,133 _4713 Pf6N2E2_4714 - GbcB Glycine betaine demethylase subunit B, at 5,450,351 to 5,451,517 _4714 Pf6N2E2_4715 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 5,451,671 to 5,452,711 _4715 Pf6N2E2_4716 - Membrane protein, putative, at 5,452,907 to 5,453,611 _4716 Pf6N2E2_4717 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 5,453,920 to 5,455,173 _4717
Group Condition Pf6N2E2_4713 Pf6N2E2_4714 Pf6N2E2_4715 Pf6N2E2_4716 Pf6N2E2_4717
carbon source Carnitine Hydrochloride (C) -4.3 -4.4 +0.4 +0.1 -3.9
carbon source Carnitine Hydrochloride (C) -4.4 -4.3 +0.1 +0.2 -2.8
carbon source Ying_Others16 rep A; time point 3 -0.8 -0.8 -0.5 +0.4 -1.8
carbon source Ying_Others16 rep B; time point 3 -0.7 -0.7 -0.1 +0.3 -2.2
carbon source Ying_Others16 rep C; time point 3 -0.7 -0.8 +0.2 +0.3 -2.2
carbon source Ying_Others16 rep A; time point 2 -0.3 -0.6 -0.9 +0.4 -1.7
carbon source Ying_Others16 rep C; time point 1 -0.2 -0.5 -1.0 -0.1 -1.0
carbon source Ying_Others16 rep A; time point 1 -0.4 -0.4 -0.7 -0.0 -0.8
carbon source Ying_Others16 rep B; time point 2 -0.0 -0.5 -0.6 +0.4 -1.5
carbon source Carbon source D-Glucose 10 mM -0.0 -0.2 -1.3 -0.1 -0.4
carbon source Ying_all64 rep B; time point 3 -0.3 -0.5 -0.3 +0.2 -1.0
carbon source Carbon source Sucrose 5 mM -0.3 -0.2 -1.3 +0.2 -0.3
carbon source Ying_all64 rep C; time point 3 -0.5 -0.5 -0.2 +0.3 -0.9
carbon source Ying_all64 rep A; time point 3 -0.4 -0.5 -0.2 +0.1 -0.8
carbon source Ying_Others16 rep C; time point 2 -0.0 -0.5 -0.1 +0.2 -1.2
stress Magnesium chloride 0.125 M +0.1 +0.2 -1.2 -0.1 -0.3
stress Hydroxide 0.05 M +0.1 -0.1 -0.7 -0.4 -0.2
carbon source Ying_Nucleobase14 rep C; time point 1 +0.3 -0.0 -1.1 -0.1 -0.2
stress deoxycholate 0.0125 M -0.1 +0.4 -1.1 +0.1 -0.3
carbon source Ying_AminoAcid20 rep B; time point 3 -0.1 -0.2 -0.4 +0.3 -0.4
stress Cobalt chloride 0.6 mM +0.1 -0.3 -1.0 +0.4 +0.1
carbon source Ying_AminoAcid20 rep B; time point 2 +0.1 +0.0 -0.6 +0.2 -0.4
motility inner cut, LB soft agar motility assay +0.1 +0.2 +0.2 -0.9 -0.0
stress Bile salts 0.0125 M -0.0 +0.2 -0.9 +0.2 +0.3
nitrogen source Glycine (N) -0.2 +0.2 +0.6 +0.1 -0.8
resistance 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine +0.2 +0.1 -0.8 +0.4 +0.1
stress antimonate 0.005 M +0.5 +0.4 -1.0 +0.1 -0.1
lb LB no stress 48 hours +0.3 +0.3 -0.4 -0.2 +0.2
nitrogen source nitrogen source nitrite 1mM -0.3 +0.2 +0.8 +0.2 -0.0
nitrogen source nitrogen source nitrite 1mM +0.3 -0.0 +0.9 -0.1 -0.3
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