Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_4685 and Pf6N2E2_4686 are separated by 574 nucleotidesPf6N2E2_4686 and Pf6N2E2_4687 are separated by 144 nucleotidesPf6N2E2_4687 and Pf6N2E2_4688 are separated by 300 nucleotidesPf6N2E2_4688 and Pf6N2E2_4689 are separated by 20 nucleotides Pf6N2E2_4685 - L-serine dehydratase (EC 4.3.1.17), at 5,418,363 to 5,419,739 _4685 Pf6N2E2_4686 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,420,314 to 5,421,417 _4686 Pf6N2E2_4687 - FIG00953780: hypothetical protein, at 5,421,562 to 5,421,825 _4687 Pf6N2E2_4688 - Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1), at 5,422,126 to 5,423,289 _4688 Pf6N2E2_4689 - L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data), at 5,423,310 to 5,423,786 _4689
Group Condition Pf6N2E2_4685 Pf6N2E2_4686 Pf6N2E2_4687 Pf6N2E2_4688 Pf6N2E2_4689
carbon source Carnitine Hydrochloride (C) -1.2 -7.5 +1.1 +1.6 -5.1
carbon source Carnitine Hydrochloride (C) -1.3 -6.1 +0.9 +1.4 -5.9
carbon source Ying_Others16 rep B; time point 3 -0.3 -0.6 -0.3 +0.2 -1.0
carbon source Ying_Others16 rep A; time point 3 -0.0 -0.6 +0.1 +0.1 -1.1
carbon source Ying_Others16 rep C; time point 3 +0.1 -0.7 +0.2 +0.6 -1.6
nitrogen source Glycine (N) +0.0 -1.1 -0.5 +0.0 +0.2
carbon source L-Leucine (C) -0.1 -0.0 -0.2 -0.5 -0.3
carbon source Ying_Others16 rep C; time point 2 -0.3 -0.0 +0.2 -0.0 -0.7
nitrogen source Glycine (N) +0.1 -1.1 +0.1 +0.1 -0.1
carbon source D-Galactose (C) +0.0 -0.7 -0.3 +0.2 +0.0
carbon source D-Galactose (C) +0.2 -0.6 -0.3 +0.1 -0.0
nitrogen source L-Serine (N) -0.9 -0.2 -0.0 +0.3 +0.1
carbon source Ying_Others16 rep B; time point 2 -0.3 -0.1 +0.3 +0.2 -0.7
carbon source Ying_Others16 rep A; time point 2 -0.4 -0.0 +0.3 +0.1 -0.6
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.2 +0.1 -0.7 +0.1 -0.2
stress RCH2 defined with Cobalt chloride 0.04 mM -0.4 -0.2 +0.5 -0.2 -0.1
carbon source L-Phenylalanine (C) +0.1 -0.6 +0.5 -0.1 -0.2
carbon source Ying_all64 rep C; time point 3 +0.4 -0.2 -0.1 +0.0 -0.5
stress Cobalt chloride 0.6 mM -0.2 +0.2 +0.6 -0.6 -0.3
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.7 +0.2 +0.0 +0.4 -0.2
stress RCH2 defined with copper (II) chloride 0.03 mM -0.2 +0.3 -0.2 +0.3 -0.3
carbon source L-Phenylalanine (C) +0.4 -0.5 +0.2 -0.2 +0.0
stress Cobalt chloride 0.4 mM -0.1 +0.1 +0.6 -0.6 +0.0
stress deoxycholate 0.0125 M +0.4 +0.4 -0.1 -0.5 -0.2
carbon source Ying_all64 rep A; time point 3 +0.2 +0.2 -0.2 +0.3 -0.4
stress Zinc chloride 0.0000015625 M -0.1 -0.3 +0.5 +0.5 -0.3
nitrogen source L-Serine (N) -0.4 +0.2 +0.3 +0.2 -0.1
stress RCH2 defined with Cobalt chloride 0.04 mM -0.1 +0.3 +0.4 +0.1 -0.5
carbon source Ying_Others16 rep A; time point 1 -0.1 +0.2 +0.2 +0.5 -0.2
nitrogen source Gly-Glu (N) +0.1 +0.3 +0.1 +0.5 -0.3
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