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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4640 and Pf6N2E2_4641 are separated by 23 nucleotides
Pf6N2E2_4641 and Pf6N2E2_4642 are separated by 87 nucleotides
Pf6N2E2_4642 and Pf6N2E2_4643 are separated by 38 nucleotides
Pf6N2E2_4643 and Pf6N2E2_4644 are separated by 459 nucleotides
Pf6N2E2_4640 - hypothetical protein, at 5,370,449 to 5,370,571
_4640
Pf6N2E2_4641 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 5,370,595 to 5,370,996
_4641
Pf6N2E2_4642 - Putative transport, at 5,371,084 to 5,371,965
_4642
Pf6N2E2_4643 - EXOU, at 5,372,004 to 5,373,731
_4643
Pf6N2E2_4644 - Arabinose efflux permease, at 5,374,191 to 5,375,351
_4644
Group
Condition
Pf6N2E2
_4640
Pf6N2E2
_4641
Pf6N2E2
_4642
Pf6N2E2
_4643
Pf6N2E2
_4644
stress
thiosulfate 0.25 M
-3.1
-0.4
+0.3
+0.0
-0.0
motility
outer cut, LB soft agar motility assay
-2.2
-0.4
+0.0
-0.3
-0.2
stress
copper (II) chloride 3 mM
+0.3
-2.0
+0.1
-0.2
-0.3
carbon source
RCH2_defined
-1.7
-0.1
-0.0
+0.1
-0.2
stress
DEANONOate 0.000625 M
+0.5
-2.4
-0.2
-0.1
+0.4
nitrogen source
L-Glutamine (N)
-1.2
-0.2
+0.0
+0.0
-0.3
stress
Bile salts 0.0125 M
-1.0
+0.1
-0.0
-0.3
-0.3
stress
Zinc chloride 0.0000015625 M
+0.2
-1.8
+0.0
+0.0
+0.0
stress
Hydroxylamine 0.5 M
-2.5
-0.2
+0.5
+0.3
+0.5
nitrogen source
nitrogen source nitrite 0.5mM
-1.3
+0.3
+0.0
-0.1
-0.2
nitrogen source
L-Serine (N)
-1.5
+0.4
-0.2
+0.3
-0.2
stress
Fusidic 0.3 mg/ml
-1.4
+0.3
-0.0
+0.1
-0.1
stress
DEANONOate 0.000625 M
+0.8
-1.7
+0.0
-0.0
+0.1
stress
Chloride 0.5 M
-0.9
+0.1
+0.4
-0.2
-0.2
stress
dimethyl sulfone 0.25 M
-0.6
+0.3
+0.2
-0.2
-0.4
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.5
+0.6
+0.3
-0.3
-0.6
nitrogen source
L-Arginine (N)
+1.0
+0.1
-0.1
+0.0
-0.4
carbon source
Ying_Nucleobase14 rep B; time point 3
+1.5
-0.6
+0.1
+0.1
-0.2
vitamin
With vitamins t1
+1.4
-0.2
+0.0
+0.2
-0.3
vitamin
With vitamins t2
+1.4
+0.0
-0.2
+0.0
-0.0
nitrogen source
L-Isoleucine (N)
+0.9
+0.5
+0.1
+0.2
-0.3
stress
Cobalt chloride 0.4 mM
+1.2
+0.2
-0.1
-0.0
+0.2
nitrogen source
Glycine (N)
+1.1
-0.1
+0.3
-0.0
+0.1
stress
Cobalt chloride 0.6 mM
+0.5
+0.9
-0.0
+0.2
-0.1
stress
Cobalt chloride 0.6 mM
+1.2
+0.7
-0.1
+0.1
-0.3
nitrogen source
L-Serine (N)
+1.3
+0.1
+0.1
+0.1
+0.1
nitrogen source
Uridine (N)
+1.6
+0.4
-0.0
+0.0
-0.2
carbon source
Ying_Nucleobase14 rep C; time point 2
+1.3
-0.0
+0.2
+0.1
+0.3
stress
Cobalt chloride 0.6 mM
+0.6
+1.0
+0.2
+0.1
+0.1
carbon source
Ying_OrganicAcid7 rep B; time point 2
+2.1
-0.2
+0.3
+0.2
+0.1
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