Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_44 and Pf6N2E2_45 are separated by 177 nucleotidesPf6N2E2_45 and Pf6N2E2_46 are separated by 54 nucleotidesPf6N2E2_46 and Pf6N2E2_47 overlap by 4 nucleotidesPf6N2E2_47 and Pf6N2E2_48 are separated by 89 nucleotides Pf6N2E2_44 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 82,928 to 84,607 _44 Pf6N2E2_45 - Putative protease, at 84,785 to 86,209 _45 Pf6N2E2_46 - membrane protein, putative, at 86,264 to 87,325 _46 Pf6N2E2_47 - FIG00961567: hypothetical protein, at 87,322 to 87,504 _47 Pf6N2E2_48 - FIG00955661: hypothetical protein, at 87,594 to 87,788 _48
Group Condition Pf6N2E2_44 Pf6N2E2_45 Pf6N2E2_46 Pf6N2E2_47 Pf6N2E2_48
carbon source octanoate (C) -0.2 -0.1 +0.1 N.D. -1.9
carbon source Ying_sugar7 rep B; time point 1 -0.4 -0.2 -0.3 N.D. -0.9
stress Aluminum chloride 0.00005 M -0.1 -0.1 -0.0 N.D. -1.4
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.0 +0.0 -0.0 N.D. -1.5
carbon source Ying_all64 rep C; time point 3 +0.1 -0.1 +0.1 N.D. -1.5
motility outer cut, LB soft agar motility assay -0.6 +0.1 +0.2 N.D. -1.1
carbon source Ying_Others16 rep A; time point 2 -0.4 -0.2 +0.1 N.D. -0.8
nitrogen source L-Serine (N) -0.4 +0.1 -0.6 N.D. -0.4
stress Cobalt chloride 0.4 mM -0.0 -0.1 +0.3 N.D. -1.5
carbon source Ying_AminoAcid20 rep B; time point 3 +0.2 -0.1 +0.2 N.D. -1.5
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.0 -0.1 +0.4 N.D. -1.6
vitamin No vitamins t2 -0.2 +0.2 +0.2 N.D. -1.3
carbon source Ying_Nucleobase14 rep A; time point 3 +0.4 -0.1 +0.1 N.D. -1.5
carbon source Ying_all64 rep A; time point 3 +0.1 -0.1 +0.4 N.D. -1.4
carbon source Carbon source Sucrose 2.5 mM +0.2 -0.0 -0.1 N.D. -1.1
carbon source Carbon source D,L-Lactate 10 mM +0.1 +0.1 -0.1 N.D. -1.2
carbon source Ying_Nucleobase14 rep B; time point 3 +0.1 +0.1 +0.2 N.D. -1.4
carbon source Ying_Nucleobase14 rep C; time point 2 -0.2 -0.0 +0.3 N.D. -1.0
motility inner cut, LB soft agar motility assay -0.6 +0.1 +0.2 N.D. -0.7
carbon source Ying_Nucleobase14 rep C; time point 3 +0.2 -0.1 +0.3 N.D. -1.4
carbon source Ying_all64 rep B; time point 3 +0.3 -0.0 +0.3 N.D. -1.5
carbon source Carbon source D-Glucose 10 mM +0.2 +0.1 -0.0 N.D. -1.2
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.2 +0.1 +0.4 N.D. -1.5
stress Manganese (II) chloride tetrahydrate 0.00078125 M +0.2 +0.2 -0.1 N.D. -1.1
lb LB no stress 24 hours +0.1 +0.2 +0.1 N.D. -1.1
carbon source Ying_Others16 rep C; time point 3 +0.2 +0.0 +0.3 N.D. -1.1
stress phosphite 0.25 M +0.1 +0.1 +0.3 N.D. -1.0
stress RCH2 defined with Cobalt chloride 0.04 mM +0.4 -0.1 -0.3 N.D. +0.8
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B -0.2 +0.4 -0.1 N.D. +1.1
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C -0.0 +0.7 +0.0 N.D. +0.8
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