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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_454 and Pf6N2E2_455 are separated by 120 nucleotides
Pf6N2E2_455 and Pf6N2E2_456 are separated by 250 nucleotides
Pf6N2E2_456 and Pf6N2E2_457 are separated by 103 nucleotides
Pf6N2E2_457 and Pf6N2E2_458 are separated by 299 nucleotides
Pf6N2E2_454 - Mobile element protein, at 516,862 to 518,130
_454
Pf6N2E2_455 - Permease of the drug/metabolite transporter (DMT) superfamily, at 518,251 to 519,195
_455
Pf6N2E2_456 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
(from data)
, at 519,446 to 520,522
_456
Pf6N2E2_457 - hypothetical protein, at 520,626 to 521,573
_457
Pf6N2E2_458 - Protein rarD, at 521,873 to 522,757
_458
Group
Condition
Pf6N2E2
_454
Pf6N2E2
_455
Pf6N2E2
_456
Pf6N2E2
_457
Pf6N2E2
_458
carbon source
L-Phenylalanine (C)
N.D.
-0.0
-4.4
N.D.
-0.4
carbon source
L-Phenylalanine (C)
N.D.
+0.2
-4.0
N.D.
-0.1
nitrogen source
L-Phenylalanine (N)
N.D.
-0.1
-3.7
N.D.
+0.1
nitrogen source
L-Phenylalanine (N)
N.D.
+0.3
-3.9
N.D.
+0.0
carbon source
Ying_OrganicAcid7 rep A; time point 3
N.D.
-0.3
-1.3
N.D.
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
N.D.
-0.1
-1.5
N.D.
+0.1
stress
Zinc chloride 0.0000015625 M
N.D.
-0.4
-0.6
N.D.
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
N.D.
-0.2
-0.9
N.D.
-0.1
motility
outer cut, LB soft agar motility assay
N.D.
-0.3
-0.5
N.D.
-0.3
carbon source
Ying_OrganicAcid7 rep B; time point 3
N.D.
-0.4
-0.7
N.D.
-0.0
carbon source
Ying_Others16 rep C; time point 1
N.D.
-0.9
-0.2
N.D.
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 2
N.D.
-0.2
-0.5
N.D.
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 3
N.D.
-0.0
-0.7
N.D.
-0.2
carbon source
Ying_OrganicAcid7 rep C; time point 3
N.D.
-0.0
-0.9
N.D.
+0.0
lb
LB no stress 48 hours
N.D.
-0.2
-0.4
N.D.
-0.3
carbon source
Glycerol (C)
N.D.
+0.0
-0.1
N.D.
-0.7
lb
LB no stress 24 hours
N.D.
+0.1
-0.5
N.D.
-0.4
stress
bromate 0.05 M
N.D.
+0.0
-0.6
N.D.
-0.3
nitrogen source
L-Serine (N)
N.D.
+0.2
-0.3
N.D.
-0.7
nitrogen source
Putrescine (N)
N.D.
-0.5
+0.2
N.D.
-0.2
carbon source
RCH2_defined
N.D.
-0.3
+0.3
N.D.
-0.4
vitamin
No vitamins t2
N.D.
+0.5
-0.2
N.D.
-0.2
stress
Cobalt chloride 0.6 mM
N.D.
-0.4
+0.2
N.D.
+0.7
vitamin
No vitamins t1
N.D.
+0.7
-0.2
N.D.
+0.1
stress
Cobalt chloride 0.6 mM
N.D.
-0.0
+0.3
N.D.
+0.6
stress
Nickel (II) chloride 0.0025 M
N.D.
+0.0
+0.4
N.D.
+0.5
stress
Magnesium chloride 0.125 M
N.D.
+0.5
+0.3
N.D.
+0.2
stress
Cobalt chloride 0.6 mM
N.D.
+0.1
+0.3
N.D.
+0.9
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
-0.7
-0.2
N.D.
+3.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
+0.0
-0.4
N.D.
+3.4
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