Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_4478 and Pf6N2E2_4479 are separated by 129 nucleotidesPf6N2E2_4479 and Pf6N2E2_4480 are separated by 25 nucleotidesPf6N2E2_4480 and Pf6N2E2_4481 overlap by 4 nucleotidesPf6N2E2_4481 and Pf6N2E2_4482 are separated by 61 nucleotides Pf6N2E2_4478 - FIG019278: hypothetical protein, at 5,210,385 to 5,210,594 _4478 Pf6N2E2_4479 - FIG001590: Putative conserved exported protein precursor, at 5,210,724 to 5,211,278 _4479 Pf6N2E2_4480 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 5,211,304 to 5,212,638 _4480 Pf6N2E2_4481 - 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-), at 5,212,635 to 5,213,822 _4481 Pf6N2E2_4482 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 5,213,884 to 5,215,107 _4482
Group Condition Pf6N2E2_4478 Pf6N2E2_4479 Pf6N2E2_4480 Pf6N2E2_4481 Pf6N2E2_4482
stress deoxycholate 0.0125 M +0.1 -5.4 -1.5 N.D. N.D.
carbon source D-Galactose (C) -1.6 -2.1 -1.4 N.D. N.D.
carbon source D-Glucosamine Hydrochloride (C) -1.7 -1.2 -1.1 N.D. N.D.
carbon source D-Galactose (C) -2.3 -0.7 -0.9 N.D. N.D.
carbon source D-Fructose (C) -2.7 -0.3 -0.8 N.D. N.D.
carbon source m-Inositol (C) -1.9 -0.9 -0.9 N.D. N.D.
carbon source D-Xylose (C) -0.6 -1.9 -0.6 N.D. N.D.
carbon source Ying_Nucleobase14 rep C; time point 3 -1.0 -1.1 -0.7 N.D. N.D.
carbon source Ying_Nucleobase14 rep A; time point 3 -0.8 -1.1 -0.7 N.D. N.D.
carbon source Ying_Nucleobase14 rep B; time point 3 -0.9 -1.1 -0.7 N.D. N.D.
carbon source Glycerol (C) -0.9 -1.2 -0.5 N.D. N.D.
stress Bile salts 0.0125 M +0.1 -1.1 -1.5 N.D. N.D.
nitrogen source L-Serine (N) -0.2 -2.5 +0.5 N.D. N.D.
carbon source D-Mannose (C) -0.6 -1.0 -0.6 N.D. N.D.
nitrogen source L-Aspartic Acid (N) -0.2 -1.8 +0.2 N.D. N.D.
stress Choline Lysine 20 mM +0.6 -0.5 -1.8 N.D. N.D.
stress Magnesium chloride 0.125 M -1.5 -0.4 +0.6 N.D. N.D.
stress Chlorite 0.00005 M +0.8 -1.1 -0.5 N.D. N.D.
nitrogen source nitrogen source nitrate 20mM +1.5 -0.6 -0.4 N.D. N.D.
carbon source octanoate (C) -0.8 +1.2 +0.4 N.D. N.D.
stress Cobalt chloride 0.6 mM -0.7 +1.3 +0.4 N.D. N.D.
stress Cobalt chloride 0.6 mM -0.7 +1.2 +0.6 N.D. N.D.
nitrogen source nitrogen source nitrite 1mM +2.0 -0.4 -0.3 N.D. N.D.
nitrogen source nitrogen source nitrate 20mM +1.3 +0.5 -0.5 N.D. N.D.
nitrogen source nitrogen source nitrite 5mM +1.9 -0.0 -0.3 N.D. N.D.
nitrogen source nitrogen source nitrite 0.5mM +1.5 +0.5 -0.4 N.D. N.D.
nitrogen source nitrogen source nitrite 5mM +2.1 +0.4 -0.3 N.D. N.D.
stress Rifampicin 0.003 mg/ml +0.4 +1.7 +0.4 N.D. N.D.
stress RCH2 defined with Cobalt chloride 0.04 mM -0.1 +0.8 +2.1 N.D. N.D.
stress RCH2 defined with Cobalt chloride 0.04 mM -0.5 +1.2 +2.1 N.D. N.D.
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