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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4471 and Pf6N2E2_4472 overlap by 1 nucleotides
Pf6N2E2_4472 and Pf6N2E2_4473 overlap by 4 nucleotides
Pf6N2E2_4473 and Pf6N2E2_4474 are separated by 81 nucleotides
Pf6N2E2_4474 and Pf6N2E2_4475 are separated by 194 nucleotides
Pf6N2E2_4471 - ABC-type multidrug transport system, permease component, at 5,203,430 to 5,204,548
_4471
Pf6N2E2_4472 - ABC-type multidrug transport system, permease component, at 5,204,548 to 5,207,271
_4472
Pf6N2E2_4473 - HlyD family secretion protein, at 5,207,268 to 5,208,233
_4473
Pf6N2E2_4474 - FIG006231: RNA-binding protein, at 5,208,315 to 5,208,764
_4474
Pf6N2E2_4475 - FIG00953390: hypothetical protein, at 5,208,959 to 5,209,105
_4475
Group
Condition
Pf6N2E2
_4471
Pf6N2E2
_4472
Pf6N2E2
_4473
Pf6N2E2
_4474
Pf6N2E2
_4475
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B
-3.5
-4.9
-5.8
-0.0
N.D.
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
-3.6
-4.9
-5.5
-0.0
N.D.
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C
-3.4
-5.1
-5.1
-0.0
N.D.
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
-3.3
-5.0
-5.3
+0.1
N.D.
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B
-2.8
-4.9
-5.1
+0.1
N.D.
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
-2.9
-4.8
-4.9
+0.1
N.D.
denitrifying
Nitrate reduction, replicate A
-3.2
-4.6
-4.6
+0.3
N.D.
stress
RCH2 defined with Zinc 0.032 mM
-3.1
-3.9
-4.1
-0.4
N.D.
denitrifying
Nitrate reduction, replicate B
-2.9
-4.0
-4.4
+0.1
N.D.
carbon source
RCH2_defined
-2.8
-3.8
-3.6
+0.0
N.D.
stress
RCH2 defined with Zinc 0.032 mM
-2.7
-3.6
-3.6
-0.1
N.D.
stress
RCH2 defined with Zinc 0.016 mM
-2.9
-3.5
-3.1
-0.3
N.D.
carbon source
RCH2_defined
-2.5
-3.5
-3.6
-0.2
N.D.
stress
RCH2 defined with Zinc 0.016 mM
-2.4
-3.2
-3.2
-0.1
N.D.
denitrifying
Nitrate reduction, replicate C
-2.7
-2.8
-3.0
+0.3
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 2
-2.2
-2.1
-3.0
+0.0
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 3
-2.1
-2.0
-2.7
-0.3
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 3
-2.0
-2.1
-2.6
-0.2
N.D.
anaerobic
N1B4wt with N2E2m denitrifying replicate B
-1.8
-2.2
-3.0
+0.1
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 3
-2.1
-2.1
-2.6
-0.1
N.D.
carbon source
Ying_OrganicAcid7 rep B; time point 3
-2.0
-2.1
-2.7
-0.1
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 3
-2.0
-2.0
-2.6
-0.2
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 2
-2.0
-1.9
-2.9
-0.1
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 2
-2.1
-1.9
-2.8
-0.1
N.D.
carbon source
Ying_Nucleobase14 rep C; time point 2
-2.1
-1.8
-2.6
-0.3
N.D.
carbon source
Ying_Nucleobase14 rep A; time point 3
-2.0
-2.0
-2.7
-0.1
N.D.
carbon source
Ying_OrganicAcid7 rep B; time point 2
-2.0
-1.9
-2.7
-0.0
N.D.
carbon source
Ying_OrganicAcid7 rep A; time point 2
-1.9
-1.9
-2.7
-0.2
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 2
-2.0
-1.9
-2.8
-0.0
N.D.
carbon source
Ying_OrganicAcid7 rep A; time point 3
-1.9
-2.1
-2.7
+0.0
N.D.
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