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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_445 and Pf6N2E2_446 are separated by 200 nucleotides
Pf6N2E2_446 and Pf6N2E2_447 are separated by 174 nucleotides
Pf6N2E2_447 and Pf6N2E2_448 are separated by 124 nucleotides
Pf6N2E2_448 and Pf6N2E2_449 are separated by 87 nucleotides
Pf6N2E2_445 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 507,127 to 507,966
_445
Pf6N2E2_446 - Glutathione reductase (EC 1.8.1.7), at 508,167 to 509,525
_446
Pf6N2E2_447 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 509,700 to 510,263
_447
Pf6N2E2_448 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 510,388 to 511,950
_448
Pf6N2E2_449 - Lactoylglutathione lyase (EC 4.4.1.5), at 512,038 to 512,559
_449
Group
Condition
Pf6N2E2
_445
Pf6N2E2
_446
Pf6N2E2
_447
Pf6N2E2
_448
Pf6N2E2
_449
stress
deoxycholate 0.0125 M
-4.3
-0.8
-0.2
-0.4
-2.4
stress
Bile salts 0.0125 M
-3.8
-1.0
-2.4
-0.2
-0.1
stress
copper (II) chloride 3 mM
-6.8
-0.3
+0.2
+0.2
+0.3
stress
Hydroxylamine 0.5 M
-1.5
-1.1
-3.6
-0.1
+0.0
motility
outer cut, LB soft agar motility assay
-4.7
+1.2
-1.0
-0.2
-0.8
stress
DEANONOate 0.000625 M
+0.4
+0.4
-4.1
-0.9
-0.8
stress
Choline Lysine 20 mM
-2.0
-0.1
-2.2
-0.4
-0.2
motility
inner cut, LB soft agar motility assay
-5.2
+1.4
-0.8
-0.0
+0.0
stress
DEANONOate 0.000625 M
+0.0
+0.6
-2.4
-1.1
-1.5
stress
dimethyl sulfone 0.25 M
-2.2
-0.7
-0.5
-0.2
-0.7
motility
inner cut, LB soft agar motility assay
-4.7
+2.1
-1.1
-0.2
-0.1
stress
phosphite 0.25 M
-3.5
-0.3
+0.2
+0.1
-0.6
stress
tungstate 0.05 M
-2.7
+0.0
-0.5
-0.3
-0.4
stress
D-Cycloserine 0.12 mg/ml
-0.2
+0.2
-3.9
+0.0
-0.2
stress
sodium iodate 0.005 M
-1.5
-1.8
-0.1
+0.2
-0.7
stress
molybdate 0.25 M
-3.4
+0.1
-0.2
-0.3
-0.0
stress
selenite 0.0025 M
-0.7
-1.6
-0.7
-0.1
-0.7
stress
selenate 0.5 M
-2.2
-1.9
+0.3
+0.1
+0.2
stress
dimethyl sulfone 0.25 M
-2.5
-0.9
-0.1
-0.1
+0.1
stress
selenate 0.5 M
-1.7
-1.4
+0.1
+0.0
-0.4
stress
Cobalt chloride 0.6 mM
-1.6
-2.1
+0.1
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
-2.8
+1.4
-0.8
-0.2
-0.2
stress
Cobalt chloride 0.6 mM
-0.6
-3.0
+0.3
+0.2
+0.6
motility
inner cut, LB soft agar motility assay
-3.8
+2.0
-0.4
-0.0
+0.3
stress
Magnesium chloride 0.125 M
+2.2
-0.5
+0.3
-0.2
-0.9
stress
Chloramphenicol 0.008 mg/ml
+1.7
+2.0
-1.6
+0.1
-0.4
nitrogen source
Urea (N)
+3.0
-0.4
-0.2
-0.0
-0.1
stress
Lomefloxacin 0.0002 mM
+2.5
+0.3
+0.3
-0.3
-0.4
stress
Rifampicin 0.003 mg/ml
+2.3
+0.7
-0.6
-0.2
+0.3
stress
Vancomycin 0.24 mg/ml
+5.7
-0.2
-0.8
+0.1
-0.5
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