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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4437 and Pf6N2E2_4438 overlap by 4 nucleotides
Pf6N2E2_4438 and Pf6N2E2_4439 are separated by 50 nucleotides
Pf6N2E2_4439 and Pf6N2E2_4440 overlap by 1 nucleotides
Pf6N2E2_4440 and Pf6N2E2_4441 are separated by 143 nucleotides
Pf6N2E2_4437 - Twin-arginine translocation protein TatB, at 5,168,942 to 5,170,117
_4437
Pf6N2E2_4438 - hypothetical protein, at 5,170,114 to 5,170,578
_4438
Pf6N2E2_4439 - Glutathione-regulated potassium-efflux system ATP-binding protein, at 5,170,629 to 5,172,539
_4439
Pf6N2E2_4440 - Small-conductance mechanosensitive channel, at 5,172,539 to 5,173,120
_4440
Pf6N2E2_4441 - Homoserine/homoserine lactone efflux protein, at 5,173,264 to 5,173,896
_4441
Group
Condition
Pf6N2E2
_4437
Pf6N2E2
_4438
Pf6N2E2
_4439
Pf6N2E2
_4440
Pf6N2E2
_4441
stress
phosphite 0.25 M
-0.1
-0.1
-0.8
-2.7
-0.1
stress
DEANONOate 0.000625 M
+0.5
-1.7
-1.6
-0.4
-0.6
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.0
+0.0
-1.8
-0.2
-1.0
stress
antimonate 0.005 M
-1.3
-0.7
-0.5
-0.3
-0.1
stress
Hydroxylamine 0.5 M
-0.4
-0.7
-1.1
-0.3
+0.0
stress
antimonate 0.005 M
-2.0
-0.4
-0.2
-0.0
+0.2
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.6
+0.2
-0.6
-1.1
-0.2
stress
phosphite 0.25 M
-0.3
-0.4
-0.4
-1.2
+0.0
stress
Chloride 600 mM
+0.1
-0.8
-0.3
-0.7
-0.3
carbon source
Ying_AminoAcid20 rep A; time point 3
-0.4
+0.0
-0.5
-1.1
-0.0
stress
DEANONOate 0.000625 M
+0.4
-1.9
-1.0
+0.3
+0.2
stress
Fusidic 0.3 mg/ml
-0.3
-0.7
-0.6
-0.0
-0.3
carbon source
Ying_OrganicAcid7 rep A; time point 3
-0.5
+0.3
-0.3
-1.0
-0.5
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.3
+0.1
-0.5
-1.2
-0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.2
-0.3
-0.2
+0.2
-1.2
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.5
+0.3
-0.3
-0.7
-0.5
stress
Fusidic 0.4 mg/ml
-0.6
-1.0
-0.3
+0.1
+0.0
stress
Chloramphenicol 0.008 mg/ml
+0.1
-0.2
-1.5
+0.0
-0.1
stress
5-Hydroxymethylfurfural 10 mM
-0.6
+0.2
-1.1
+0.1
-0.0
carbon source
Ying_all64 rep A; time point 3
+0.4
+0.4
-0.3
-1.0
-0.2
carbon source
Ying_Others16 rep C; time point 3
+0.3
+0.5
-0.4
-0.8
-0.0
carbon source
Ying_Nucleobase14 rep C; time point 3
+0.4
+0.4
-0.3
-0.9
-0.0
stress
Nickel (II) chloride 0.0025 M
+1.1
+0.4
+0.0
-0.0
-0.5
stress
copper (II) chloride 3 mM
+0.6
+0.6
-0.4
+0.3
+0.1
stress
Cobalt chloride 0.6 mM
+0.7
-0.3
+0.8
+0.0
-0.1
carbon source
D-Alanine (C)
+1.5
-0.0
-0.5
+0.3
+0.4
carbon source
D-Galactose (C)
+1.4
+0.3
-0.0
-0.1
+0.2
stress
Cobalt chloride 0.6 mM
+0.9
-0.0
+0.9
+0.3
-0.3
stress
Cobalt chloride 0.6 mM
+1.3
+0.1
+1.0
+0.0
-0.0
stress
Cobalt chloride 0.6 mM
+1.2
+0.3
+1.3
-0.0
+0.0
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