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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_42 and Pf6N2E2_43 are separated by 250 nucleotides
Pf6N2E2_43 and Pf6N2E2_44 are separated by 259 nucleotides
Pf6N2E2_44 and Pf6N2E2_45 are separated by 177 nucleotides
Pf6N2E2_45 and Pf6N2E2_46 are separated by 54 nucleotides
Pf6N2E2_42 - Sensor protein PhoQ (EC 2.7.13.3), at 79,785 to 81,098
_42
Pf6N2E2_43 - Histidine permease YuiF, at 81,349 to 82,668
_43
Pf6N2E2_44 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 82,928 to 84,607
_44
Pf6N2E2_45 - Putative protease, at 84,785 to 86,209
_45
Pf6N2E2_46 - membrane protein, putative, at 86,264 to 87,325
_46
Group
Condition
Pf6N2E2
_42
Pf6N2E2
_43
Pf6N2E2
_44
Pf6N2E2
_45
Pf6N2E2
_46
stress
Nickel (II) chloride 1.5 mM
-2.0
-3.9
-0.0
+0.1
-0.1
stress
Nickel (II) chloride 1.5 mM
-2.1
-3.8
-0.0
-0.1
+0.1
stress
Chloride 600 mM
-4.7
-0.5
+0.2
-0.0
-0.1
stress
Nickel (II) chloride 1.5 mM
-1.2
-3.8
+0.0
+0.0
+0.0
stress
Nickel (II) chloride 1.5 mM
-1.1
-3.2
-0.1
-0.0
+0.1
stress
Nickel (II) chloride 1 mM
+0.3
-3.4
-0.0
+0.1
-0.2
stress
Nickel (II) chloride 1 mM
+0.5
-3.5
-0.1
+0.1
+0.0
stress
Rifampicin 0.003 mg/ml
-0.5
-2.7
+0.3
+0.1
-0.2
stress
Nickel (II) chloride 0.0025 M
-1.8
-0.6
-0.3
-0.1
+0.1
stress
Nickel (II) chloride 1 mM
+0.8
-3.2
-0.2
+0.0
-0.1
stress
Fluorophosphate 0.125 M
-0.7
-2.0
+0.1
+0.1
-0.0
stress
Zinc chloride 0.0000015625 M
-0.1
-2.8
+0.3
+0.2
+0.0
stress
dimethyl sulfone 0.25 M
-0.5
-1.3
-0.2
-0.0
-0.4
stress
DEANONOate 0.000625 M
-0.2
-1.9
-0.4
+0.2
+0.1
stress
DEANONOate 0.000625 M
+0.1
-2.0
+0.1
-0.1
-0.4
stress
Doxycycline hyclate 0.0001 mg/ml
-0.0
-2.3
-0.0
-0.0
+0.1
stress
Nickel (II) chloride 0.0025 M
-1.3
-0.7
-0.3
+0.1
+0.0
stress
Vancomycin 0.24 mg/ml
-0.6
-1.6
-0.2
+0.0
+0.3
stress
Chloride 0.5 M
-1.2
-0.8
+0.1
+0.1
-0.3
stress
molybdate 0.25 M
-1.7
-0.2
-0.0
-0.1
+0.1
stress
Nickel (II) chloride 1 mM
+0.3
-2.3
-0.0
+0.0
+0.1
stress
dimethyl sulfone 0.25 M
+0.2
-1.8
-0.3
+0.0
-0.1
stress
Calcium chloride 0.0125 M
-0.0
-1.9
+0.1
+0.0
-0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
-1.7
+0.1
+0.4
-0.1
-0.3
motility
inner cut, LB soft agar motility assay
-1.0
-0.3
-0.6
+0.1
+0.2
stress
periodate 0.00125 M
-1.0
-0.7
-0.2
+0.1
+0.2
stress
Calcium chloride 0.0125 M
+0.4
-1.8
+0.1
+0.2
-0.0
nitrogen source
L-Serine (N)
-0.7
+1.0
-0.4
+0.1
-0.6
stress
Choline Lysine 20 mM
+0.5
-1.5
+0.2
+0.0
+0.2
nitrogen source
L-Serine (N)
-0.2
+1.9
+0.2
+0.2
-0.1
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