Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_4240 and Pf6N2E2_4241 overlap by 10 nucleotidesPf6N2E2_4241 and Pf6N2E2_4242 are separated by 3 nucleotidesPf6N2E2_4242 and Pf6N2E2_4243 overlap by 4 nucleotidesPf6N2E2_4243 and Pf6N2E2_4244 are separated by 516 nucleotides Pf6N2E2_4240 - O-antigen export system permease protein RfbD, at 4,932,289 to 4,933,086 _4240 Pf6N2E2_4241 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 4,933,077 to 4,934,528 _4241 Pf6N2E2_4242 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 4,934,532 to 4,935,500 _4242 Pf6N2E2_4243 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 4,935,497 to 4,936,321 _4243 Pf6N2E2_4244 - Glycosyltransferase, at 4,936,838 to 4,938,481 _4244
Group Condition Pf6N2E2_4240 Pf6N2E2_4241 Pf6N2E2_4242 Pf6N2E2_4243 Pf6N2E2_4244
carbon source Ying_Nucleobase14 rep C; time point 3 -0.8 -0.3 +0.2 -0.2 -1.0
stress RCH2 defined with Cobalt chloride 0.04 mM -0.7 +0.2 -0.3 -0.6 -0.3
carbon source D-Trehalose (C) -0.1 -0.4 -0.5 -0.1 -0.4
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.3 -0.3 -0.4 -0.5 -0.0
stress RCH2 defined with Cobalt chloride 0.04 mM -0.3 +0.0 -0.2 -0.8 -0.1
motility inner cut, LB soft agar motility assay -0.7 -0.1 -0.1 -0.3 -0.2
carbon source Ying_Nucleobase14 rep A; time point 3 -0.4 +0.1 -0.1 -0.1 -0.9
carbon source Ying_Nucleobase14 rep B; time point 3 -0.5 +0.1 +0.0 +0.2 -1.1
carbon source Ying_Nucleobase14 rep B; time point 2 -0.5 +0.2 -0.3 +0.1 -0.8
motility inner cut, LB soft agar motility assay -0.4 -0.2 -0.0 -0.3 -0.2
carbon source D-Fructose (C) -0.7 -0.0 +0.1 +0.0 -0.5
carbon source L-Histidine (C) -0.5 +0.2 +0.0 -0.2 -0.5
nitrogen source Cytosine (N) -0.3 -0.2 +0.3 -0.3 -0.5
carbon source L-Leucine (C) -0.3 -0.1 +0.1 +0.0 -0.7
stress Bile salts 0.0125 M -0.2 -0.1 +0.2 -0.8 +0.1
carbon source L-Leucine (C) -0.3 +0.0 +0.1 +0.0 -0.8
motility outer cut, LB soft agar motility assay -0.3 +0.2 -0.4 -0.3 -0.1
carbon source D-Alanine (C) -0.5 +0.2 +0.1 -0.0 -0.5
stress Cobalt chloride 0.6 mM +0.2 +0.1 -0.2 -0.8 -0.0
carbon source Ying_Nucleobase14 rep A; time point 2 -0.1 +0.3 +0.1 +0.2 -0.8
carbon source Ying_Nucleobase14 rep C; time point 1 +0.4 +0.1 -0.1 -0.3 -0.3
carbon source Ying_sugar7 rep C; time point 1 +0.2 +0.2 +0.2 -0.1 -0.6
stress Aluminum chloride 4 mM -0.3 -0.2 -0.1 +0.4 +0.3
carbon source Ying_sugar7 rep B; time point 2 +0.6 +0.1 -0.0 -0.2 -0.3
carbon source Ying_AminoAcid20 rep C; time point 2 +0.6 +0.1 +0.1 -0.1 -0.4
carbon source Ying_Others16 rep C; time point 2 +0.5 +0.3 +0.4 -0.2 -0.2
nitrogen source nitrogen source nitrite 0.5mM -0.2 +0.0 +0.5 +0.4 +0.2
nitrogen source nitrogen source nitrate 20mM +0.2 -0.0 +0.6 +0.2 +0.2
nitrogen source nitrogen source nitrate 5mM -0.2 +0.3 +0.1 +0.4 +0.4
nitrogen source nitrogen source Ammonium chloride 20mM +0.3 +0.2 -0.0 +0.5 +0.5
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