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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4191 and Pf6N2E2_4192 are separated by 80 nucleotides
Pf6N2E2_4192 and Pf6N2E2_4193 are separated by 177 nucleotides
Pf6N2E2_4193 and Pf6N2E2_4194 are separated by 222 nucleotides
Pf6N2E2_4194 and Pf6N2E2_4195 are separated by 128 nucleotides
Pf6N2E2_4191 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15), at 4,876,884 to 4,877,417
_4191
Pf6N2E2_4192 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 4,877,498 to 4,878,277
_4192
Pf6N2E2_4193 - Signal transduction histidine kinase, at 4,878,455 to 4,879,972
_4193
Pf6N2E2_4194 - Two-component response regulator, at 4,880,195 to 4,880,929
_4194
Pf6N2E2_4195 - transport permease protein of gamma-aminobutyrate, at 4,881,058 to 4,882,452
_4195
Group
Condition
Pf6N2E2
_4191
Pf6N2E2
_4192
Pf6N2E2
_4193
Pf6N2E2
_4194
Pf6N2E2
_4195
stress
Nalidixic 0.004 mg/ml
N.D.
N.D.
-0.3
-0.4
-0.2
stress
Calcium chloride 0.0125 M
N.D.
N.D.
-0.4
-0.3
+0.1
nitrogen source
L-Proline (N)
N.D.
N.D.
+0.2
-0.4
-0.3
carbon source
L-Alanine (C)
N.D.
N.D.
+0.3
+0.3
-0.4
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
+0.4
+0.2
-0.2
carbon source
L-Alanine (C)
N.D.
N.D.
+0.5
+0.4
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
+0.3
+0.4
-0.2
nitrogen source
L-Alanine (N)
N.D.
N.D.
+0.5
+0.4
-0.3
carbon source
D-Glucose (C)
N.D.
N.D.
+0.4
+0.3
-0.1
carbon source
D-Glucose (C)
N.D.
N.D.
+0.4
+0.4
-0.1
nitrogen source
L-Glutamine (N)
N.D.
N.D.
+0.5
+0.4
-0.1
nitrogen source
Cytosine (N)
N.D.
N.D.
+0.4
+0.3
+0.1
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
N.D.
N.D.
+0.6
+0.4
-0.1
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
N.D.
N.D.
+0.4
+0.4
+0.1
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
+0.5
+0.5
+0.0
stress
Nickel (II) chloride 1.5 mM
N.D.
N.D.
+0.3
+0.7
-0.0
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
+0.7
+0.6
-0.3
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
N.D.
+0.5
+0.6
-0.1
stress
Nickel (II) chloride 1.5 mM
N.D.
N.D.
+0.5
+0.5
+0.1
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
+0.7
+0.5
-0.0
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
N.D.
+0.6
+0.9
-0.1
nitrogen source
Glucuronamide (N)
N.D.
N.D.
+0.8
+0.7
-0.0
stress
Doxycycline hyclate 0.0001 mg/ml
N.D.
N.D.
+0.9
+1.0
-0.3
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
+0.7
+0.9
-0.1
stress
Fusidic 0.3 mg/ml
N.D.
N.D.
+0.7
+0.9
+0.0
nitrogen source
L-Serine (N)
N.D.
N.D.
+1.4
+1.1
-0.0
nitrogen source
Cytidine (N)
N.D.
N.D.
+1.3
+1.2
+0.0
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
+1.3
+1.3
-0.0
nitrogen source
Cytidine (N)
N.D.
N.D.
+1.4
+1.3
-0.1
nitrogen source
L-Serine (N)
N.D.
N.D.
+1.3
+1.5
-0.0
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Pf6N2E2_4193
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