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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4189 and Pf6N2E2_4190 overlap by 4 nucleotides
Pf6N2E2_4190 and Pf6N2E2_4191 are separated by 10 nucleotides
Pf6N2E2_4191 and Pf6N2E2_4192 are separated by 80 nucleotides
Pf6N2E2_4192 and Pf6N2E2_4193 are separated by 177 nucleotides
Pf6N2E2_4189 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 4,873,872 to 4,874,825
_4189
Pf6N2E2_4190 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 4,874,822 to 4,876,873
_4190
Pf6N2E2_4191 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15), at 4,876,884 to 4,877,417
_4191
Pf6N2E2_4192 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 4,877,498 to 4,878,277
_4192
Pf6N2E2_4193 - Signal transduction histidine kinase, at 4,878,455 to 4,879,972
_4193
Group
Condition
Pf6N2E2
_4189
Pf6N2E2
_4190
Pf6N2E2
_4191
Pf6N2E2
_4192
Pf6N2E2
_4193
stress
Bile salts 0.0125 M
N.D.
N.D.
N.D.
N.D.
-0.5
stress
Calcium chloride 0.0125 M
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
D-Glucose (C)
N.D.
N.D.
N.D.
N.D.
+0.4
stress
Tetracycline 0.0004 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.4
nitrogen source
Parabanic Acid (N)
N.D.
N.D.
N.D.
N.D.
+0.4
stress
sodium iodate 0.005 M
N.D.
N.D.
N.D.
N.D.
+0.4
nitrogen source
Cytosine (N)
N.D.
N.D.
N.D.
N.D.
+0.4
stress
Fusidic 0.4 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.4
carbon source
D-Glucose (C)
N.D.
N.D.
N.D.
N.D.
+0.4
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
N.D.
N.D.
N.D.
N.D.
+0.4
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
N.D.
N.D.
+0.5
nitrogen source
L-Glutamine (N)
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
L-Alanine (C)
N.D.
N.D.
N.D.
N.D.
+0.5
stress
Nickel (II) chloride 1.5 mM
N.D.
N.D.
N.D.
N.D.
+0.5
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
N.D.
N.D.
N.D.
+0.5
nitrogen source
L-Alanine (N)
N.D.
N.D.
N.D.
N.D.
+0.5
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
N.D.
N.D.
N.D.
N.D.
+0.6
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
N.D.
N.D.
N.D.
+0.6
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
N.D.
N.D.
+0.7
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
N.D.
N.D.
+0.7
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
N.D.
N.D.
+0.7
stress
Fusidic 0.3 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.7
nitrogen source
Glucuronamide (N)
N.D.
N.D.
N.D.
N.D.
+0.8
stress
Doxycycline hyclate 0.0001 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.9
stress
Cobalt chloride 0.6 mM
N.D.
N.D.
N.D.
N.D.
+1.3
nitrogen source
L-Serine (N)
N.D.
N.D.
N.D.
N.D.
+1.3
nitrogen source
Cytidine (N)
N.D.
N.D.
N.D.
N.D.
+1.3
nitrogen source
L-Serine (N)
N.D.
N.D.
N.D.
N.D.
+1.4
nitrogen source
Cytidine (N)
N.D.
N.D.
N.D.
N.D.
+1.4
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