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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4171 and Pf6N2E2_4172 are separated by 21 nucleotides
Pf6N2E2_4172 and Pf6N2E2_4173 overlap by 1 nucleotides
Pf6N2E2_4173 and Pf6N2E2_4174 are separated by 79 nucleotides
Pf6N2E2_4174 and Pf6N2E2_4175 are separated by 2275 nucleotides
Pf6N2E2_4171 - hypothetical protein, at 4,853,837 to 4,854,037
_4171
Pf6N2E2_4172 - Methionine ABC transporter ATP-binding protein, at 4,854,059 to 4,854,928
_4172
Pf6N2E2_4173 - Methionine ABC transporter permease protein, at 4,854,928 to 4,855,602
_4173
Pf6N2E2_4174 - Methionine ABC transporter substrate-binding protein, at 4,855,682 to 4,856,455
_4174
Pf6N2E2_4175 - EA59 gene protein, at 4,858,731 to 4,860,299
_4175
Group
Condition
Pf6N2E2
_4171
Pf6N2E2
_4172
Pf6N2E2
_4173
Pf6N2E2
_4174
Pf6N2E2
_4175
stress
periodate 0.00125 M
-1.2
-2.8
-3.7
+0.1
-0.2
stress
chromate 0.0000015625 M
-1.7
-2.6
-2.9
-0.6
-0.1
stress
chromate 0.0000015625 M
-1.4
-2.9
-2.6
-0.4
-0.1
stress
selenate 0.5 M
-1.0
-1.5
-1.5
-0.0
+0.0
stress
Nickel (II) chloride 0.0025 M
-0.7
-1.8
-1.6
+0.2
+0.1
stress
Nickel (II) chloride 0.0025 M
-1.8
-0.6
-0.9
-0.1
-0.1
stress
phosphite 0.25 M
-0.6
-0.5
-1.3
-0.8
-0.1
motility
outer cut, LB soft agar motility assay
-1.3
-0.7
-0.5
-0.6
+0.1
stress
antimonate 0.005 M
-1.0
-0.8
-0.5
-0.1
+0.1
nitrogen source
L-Proline (N)
-0.3
-0.5
+0.2
-1.6
-0.1
stress
phosphite 0.25 M
-0.9
-0.4
-0.5
-0.3
-0.1
carbon source
Ying_OrganicAcid7 rep A; time point 2
-0.9
-0.4
-0.4
-0.5
+0.1
motility
outer cut, LB soft agar motility assay
+0.2
-1.2
-1.2
+0.1
+0.2
nitrogen source
L-Proline (N)
-0.4
-0.4
+0.1
-1.3
-0.0
stress
chromate 0.000005 M
-0.2
-1.0
-0.7
-0.2
+0.2
motility
inner cut, LB soft agar motility assay
-0.4
+0.0
-1.5
+0.1
-0.2
carbon source
Ying_AminoAcid20 rep B; time point 2
-1.0
-0.3
-0.1
-0.6
+0.4
motility
inner cut, LB soft agar motility assay
-0.3
-0.7
-1.0
-0.0
+0.4
stress
Lomefloxacin 0.0002 mM
-0.4
-0.4
+0.5
-1.4
+0.1
carbon source
Ying_AminoAcid20 rep C; time point 2
-1.5
+0.0
+0.0
-0.4
+0.3
stress
Chloramphenicol 0.008 mg/ml
-0.3
-0.1
+0.8
-1.9
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
-0.3
-0.6
+1.7
-2.1
-0.2
motility
inner cut, LB soft agar motility assay
-0.7
+0.0
-1.2
-0.1
+0.6
carbon source
octanoate (C)
-1.4
+0.3
+0.3
-0.2
-0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.2
-0.6
-0.7
+0.6
+0.2
stress
Cobalt chloride 0.6 mM
+1.2
-0.2
-0.6
+0.2
-0.0
stress
Nickel (II) chloride 1 mM
+1.5
-0.6
+0.0
-0.0
+0.1
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
+0.5
+0.6
+0.5
+0.5
-0.1
stress
bromate 0.05 M
+0.3
+0.5
+1.0
+0.6
-0.0
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+0.8
+0.7
+0.4
+0.7
+0.2
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