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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4113 and Pf6N2E2_4114 are separated by 122 nucleotides
Pf6N2E2_4114 and Pf6N2E2_4115 are separated by 1884 nucleotides
Pf6N2E2_4115 and Pf6N2E2_4116 are separated by 149 nucleotides
Pf6N2E2_4116 and Pf6N2E2_4117 are separated by 423 nucleotides
Pf6N2E2_4113 - Redox-sensing transcriptional regulator QorR, at 4,791,620 to 4,792,030
_4113
Pf6N2E2_4114 - hypothetical protein, at 4,792,153 to 4,792,368
_4114
Pf6N2E2_4115 - Probable signal peptide protein, at 4,794,253 to 4,795,056
_4115
Pf6N2E2_4116 - Inner membrane protein, at 4,795,206 to 4,795,853
_4116
Pf6N2E2_4117 - FIG00960078: hypothetical protein, at 4,796,277 to 4,796,972
_4117
Group
Condition
Pf6N2E2
_4113
Pf6N2E2
_4114
Pf6N2E2
_4115
Pf6N2E2
_4116
Pf6N2E2
_4117
nitrogen source
nitrogen source nitrite 0.5mM
-1.2
-0.0
-0.3
-0.4
+0.0
stress
Cobalt chloride 0.4 mM
-1.3
-0.3
-0.2
+0.1
-0.1
stress
Cobalt chloride 0.6 mM
-1.2
-0.3
-0.2
-0.1
-0.1
carbon source
Carbon source Sucrose 2.5 mM
-1.0
-0.0
-0.3
-0.3
+0.0
stress
Cobalt chloride 0.4 mM
-1.1
-0.3
-0.0
-0.1
+0.0
carbon source
Carbon source D-Glucose 10 mM
-0.8
-0.3
-0.4
-0.1
+0.1
stress
Aluminum chloride 4 mM
-1.3
+0.2
-0.1
-0.2
-0.0
stress
Chlorite 0.00005 M
-1.2
-0.2
+0.1
-0.2
+0.3
carbon source
D-Glucose (C)
-0.7
-0.4
+0.0
-0.2
+0.1
stress
Cobalt chloride 0.4 mM
-1.0
-0.1
+0.0
-0.2
+0.1
stress
Nickel (II) chloride 0.0025 M
-1.2
+0.2
+0.1
+0.1
-0.3
carbon source
Carbon source D,L-Lactate 10 mM
-0.8
-0.4
-0.0
+0.1
+0.1
carbon source
Ying_AminoAcid20 rep C; time point 2
+0.1
-0.1
-0.2
-0.8
+0.2
stress
Cobalt chloride 0.4 mM
-0.9
+0.2
+0.2
-0.2
+0.1
nitrogen source
L-Serine (N)
-0.5
-0.2
-0.3
+0.3
+0.1
stress
periodate 0.00125 M
-1.1
+0.1
-0.0
+0.5
+0.2
lb
LB no stress 48 hours
-0.8
+0.1
-0.0
+0.4
-0.0
stress
sodium iodate 0.005 M
-0.3
+0.4
+0.2
-0.3
-0.2
vitamin
No vitamins t2
+0.1
-0.7
-0.1
+0.5
+0.1
carbon source
propionate (C)
+0.6
-0.2
-0.0
-0.3
-0.2
stress
Nalidixic 0.004 mg/ml
+0.6
+0.1
-0.1
-0.3
-0.3
motility
inner cut, LB soft agar motility assay
+0.2
-0.2
-0.1
-0.3
+0.5
stress
bromate 0.05 M
+0.4
-0.3
-0.3
+0.3
+0.1
motility
outer cut, LB soft agar motility assay
+0.4
-0.4
-0.0
-0.2
+0.5
nitrogen source
nitrogen source nitrate 20mM
+0.5
+0.4
-0.1
-0.3
-0.3
carbon source
Carbon source Sucrose 10 mM
+1.2
-0.1
-0.2
-0.1
+0.1
stress
RCH2 defined with Zinc 0.016 mM
+0.8
+0.1
+0.2
-0.1
-0.1
stress
DEANONOate 0.000625 M
+0.9
-0.2
+0.2
+0.1
-0.0
lb
LB no stress 24 hours
+0.5
+0.4
-0.2
+0.1
+0.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.8
-0.1
+0.3
+0.1
+0.1
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