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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4007 and Pf6N2E2_4008 are separated by 481 nucleotides
Pf6N2E2_4008 and Pf6N2E2_4009 are separated by 235 nucleotides
Pf6N2E2_4009 and Pf6N2E2_4010 are separated by 146 nucleotides
Pf6N2E2_4010 and Pf6N2E2_4011 are separated by 296 nucleotides
Pf6N2E2_4007 - FIG00956018: hypothetical protein, at 4,677,257 to 4,677,439
_4007
Pf6N2E2_4008 - hypothetical protein, at 4,677,921 to 4,678,304
_4008
Pf6N2E2_4009 - GGDEF domain protein, at 4,678,540 to 4,680,447
_4009
Pf6N2E2_4010 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 4,680,594 to 4,681,778
_4010
Pf6N2E2_4011 - Sensory box/GGDEF family protein, at 4,682,075 to 4,683,064
_4011
Group
Condition
Pf6N2E2
_4007
Pf6N2E2
_4008
Pf6N2E2
_4009
Pf6N2E2
_4010
Pf6N2E2
_4011
nitrogen source
L-Proline (N)
-1.2
-0.5
-1.9
-0.4
+0.2
nitrogen source
L-Proline (N)
-1.6
-0.2
-1.8
-0.2
+0.0
carbon source
L-Leucine (C)
-0.8
-0.1
-2.4
-0.4
+0.2
carbon source
Carbon source Sucrose 10 mM
-1.0
-0.0
-2.0
+0.1
+0.0
carbon source
L-Leucine (C)
-0.7
-0.1
-2.1
-0.1
+0.1
nitrogen source
L-Citrulline (N)
-1.0
+0.0
-2.2
+0.1
+0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.5
-0.2
-2.2
+0.0
+0.1
nitrogen source
Gly-Glu (N)
-0.2
-0.1
-2.7
+0.3
-0.0
carbon source
a-Ketoglutaric (C)
+0.2
-0.3
-2.6
+0.1
-0.0
nitrogen source
L-Histidine (N)
+0.2
-0.3
-2.5
-0.1
+0.1
nitrogen source
L-Glutamine (N)
-0.7
+0.0
-2.2
+0.0
+0.4
carbon source
Putrescine (C)
-0.5
+0.3
-1.9
-0.4
+0.1
carbon source
Carbon source D-Glucose 10 mM
-0.3
+0.4
-2.4
-0.1
+0.1
nitrogen source
L-Isoleucine (N)
-0.3
+0.1
-2.1
-0.3
+0.5
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-1.0
-0.6
-1.2
+0.2
+0.5
nitrogen source
Glucuronamide (N)
-0.0
-0.4
-2.1
+0.5
-0.1
nitrogen source
Glycine (N)
-0.3
+0.2
-2.5
+0.4
+0.1
carbon source
D-Glucose (C)
-0.2
+0.3
-2.2
-0.2
+0.1
carbon source
L-Leucine (C)
+0.3
-0.3
-2.4
+0.0
+0.4
nitrogen source
L-Alanine (N)
-1.0
+0.1
-1.6
+0.2
+0.4
nitrogen source
Parabanic Acid (N)
+0.4
-0.1
-2.4
-0.1
+0.3
carbon source
D-Galactose (C)
+0.7
-0.4
-2.3
+0.0
+0.3
nitrogen source
Uridine (N)
-0.5
+0.1
-1.8
+0.5
-0.0
nitrogen source
Cytidine (N)
+0.3
+0.0
-2.1
-0.3
+0.5
nitrogen source
Glucuronamide (N)
+0.4
+0.3
-2.3
-0.4
+0.4
carbon source
Carbon source Sucrose 10 mM
+0.8
-0.0
-2.1
-0.1
-0.0
nitrogen source
L-Asparagine (N)
+0.0
+0.6
-1.9
-0.3
+0.2
motility
inner cut, LB soft agar motility assay
+0.4
+0.6
-1.2
+0.6
+0.8
stress
chromate 0.0000015625 M
+3.5
+1.3
-0.1
-0.2
-0.1
stress
chromate 0.0000015625 M
+5.2
+1.9
-0.2
-0.2
+0.0
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