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Cofit
Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_3938 and Pf6N2E2_3939 are separated by 144 nucleotides
Pf6N2E2_3939 and Pf6N2E2_3940 are separated by 37 nucleotides
Pf6N2E2_3940 and Pf6N2E2_3941 are separated by 143 nucleotides
Pf6N2E2_3941 and Pf6N2E2_3942 are separated by 22 nucleotides
Pf6N2E2_3938 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 4,574,951 to 4,576,465
_3938
Pf6N2E2_3939 - Predicted integral membrane protein, at 4,576,610 to 4,577,035
_3939
Pf6N2E2_3940 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,577,073 to 4,577,729
_3940
Pf6N2E2_3941 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 4,577,873 to 4,578,352
_3941
Pf6N2E2_3942 - FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated, at 4,578,375 to 4,580,654
_3942
Group
Condition
Pf6N2E2
_3938
Pf6N2E2
_3939
Pf6N2E2
_3940
Pf6N2E2
_3941
Pf6N2E2
_3942
carbon source
Putrescine (C)
+0.4
+0.0
-4.3
-5.1
-4.7
nitrogen source
Gly-Glu (N)
-1.8
-0.1
-3.8
-4.2
-3.1
carbon source
Carnitine Hydrochloride (C)
-1.6
-0.2
-4.2
-3.8
-3.1
nitrogen source
L-Lysine (N)
-4.4
-0.3
-4.2
-3.2
-0.8
nitrogen source
Uridine (N)
-2.3
-0.2
-3.4
-4.1
-2.8
carbon source
Carnitine Hydrochloride (C)
-2.3
-0.1
-4.4
-3.0
-2.9
carbon source
octanoate (C)
-0.9
-0.3
-3.6
-5.5
-2.2
nitrogen source
Cytidine (N)
-4.2
-0.3
-5.1
-3.2
+0.4
nitrogen source
L-Lysine (N)
-2.3
-0.0
-4.6
-3.7
-1.7
nitrogen source
D-Alanine (N)
-2.3
-0.0
-5.0
-2.8
-1.9
carbon source
D-Alanine (C)
-0.8
-0.0
-4.8
-3.1
-3.0
nitrogen source
L-Arginine (N)
-1.8
+0.0
-4.5
-4.3
-1.1
carbon source
octanoate (C)
-1.1
+0.4
-3.4
-4.4
-2.8
carbon source
Putrescine (C)
+0.8
+0.3
-3.6
-4.2
-4.5
nitrogen source
Putrescine (N)
-3.3
-0.3
-4.8
-1.6
-1.1
carbon source
L-Isoleucine (C)
+0.0
-0.0
-2.8
-5.7
-2.5
nitrogen source
Uridine (N)
-3.4
-0.3
-5.1
-1.3
-0.8
carbon source
Glycerol (C)
+0.2
+0.2
-3.2
-4.3
-3.7
carbon source
L-Leucine (C)
+0.9
-0.2
-3.1
-4.4
-4.0
nitrogen source
Putrescine (N)
-2.8
+0.0
-4.0
-2.7
-1.3
nitrogen source
L-Arginine (N)
-1.5
+0.1
-5.0
-3.4
-0.6
carbon source
L-Alanine (C)
+0.8
-0.0
-3.6
-3.0
-4.2
carbon source
L-Leucine (C)
+1.1
-0.1
-3.3
-3.2
-3.9
carbon source
D-Alanine (C)
+5.1
-0.1
-3.4
-5.1
-4.2
nitrogen source
L-Proline (N)
-4.0
-0.3
-4.9
+0.8
+1.6
nitrogen source
Urea (N)
-2.8
-0.2
-5.0
+1.1
+3.9
carbon source
D-Fructose (C)
+4.0
+0.2
-1.6
-1.9
-2.9
carbon source
D-Galactose (C)
+5.7
+0.2
-2.4
-2.1
-3.4
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.6
-0.3
-2.9
+2.2
+5.3
stress
Cobalt chloride 0.6 mM
-0.1
-0.7
+0.6
+4.2
+5.6
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