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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_3928 and Pf6N2E2_3929 are separated by 63 nucleotides
Pf6N2E2_3929 and Pf6N2E2_3930 are separated by 215 nucleotides
Pf6N2E2_3930 and Pf6N2E2_3931 are separated by 112 nucleotides
Pf6N2E2_3931 and Pf6N2E2_3932 are separated by 80 nucleotides
Pf6N2E2_3928 - Methionine ABC transporter permease protein, at 4,565,467 to 4,566,111
_3928
Pf6N2E2_3929 - SAM-dependent methyltransferases, at 4,566,175 to 4,566,801
_3929
Pf6N2E2_3930 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 4,567,017 to 4,567,595
_3930
Pf6N2E2_3931 - ATPases of the AAA+ class, at 4,567,708 to 4,568,154
_3931
Pf6N2E2_3932 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 4,568,235 to 4,569,464
_3932
Group
Condition
Pf6N2E2
_3928
Pf6N2E2
_3929
Pf6N2E2
_3930
Pf6N2E2
_3931
Pf6N2E2
_3932
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.1
-0.4
-0.0
-0.2
-5.9
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-0.0
-0.5
-0.3
-0.3
-5.5
nitrogen source
L-Proline (N)
+0.1
-0.5
-0.0
-0.1
-5.4
nitrogen source
L-Glutamic (N)
+0.2
-0.2
-0.1
+0.2
-5.8
stress
RCH2 defined with Cobalt chloride 0.02 mM
+0.0
-0.1
-0.2
-0.0
-5.4
nitrogen source
L-Arginine (N)
-0.2
-0.1
-0.1
-0.0
-5.1
nitrogen source
L-Isoleucine (N)
-0.1
-0.1
-0.0
-0.3
-4.9
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
-0.1
+0.2
+0.2
-5.9
carbon source
octanoate (C)
-0.0
-0.2
-0.1
-0.6
-4.6
carbon source
Trisodium citrate (C)
+0.1
-0.1
-0.1
+0.1
-5.2
nitrogen source
nitrogen source nitrite 5mM
-0.2
+0.3
-0.1
+0.3
-5.6
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.1
+0.2
-0.3
-0.5
-4.4
nitrogen source
nitrogen source nitrate 5mM
-0.3
+0.2
-0.2
-0.0
-4.9
carbon source
L-Arabinose (C)
-0.1
+0.0
-0.2
-0.1
-4.8
carbon source
L-Lactate (C)
-0.0
-0.2
-0.2
-0.2
-4.5
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.2
-0.2
-0.3
-0.3
-4.2
nitrogen source
L-Alanine (N)
+0.1
+0.1
-0.3
-0.0
-5.0
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.1
-0.2
-0.3
+0.2
-4.8
carbon source
D,L-Lactate (C)
+0.1
+0.1
-0.3
-0.3
-4.5
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C
+0.1
-0.0
-0.2
+0.1
-5.0
carbon source
octanoate (C)
-0.1
+0.0
+0.3
-0.1
-4.8
carbon source
L-Leucine (C)
+0.2
-0.2
-0.8
+0.3
-4.2
carbon source
a-Ketoglutaric (C)
-0.2
+0.1
-0.0
+0.2
-4.6
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+0.4
-0.2
+0.3
-5.0
nitrogen source
Cytosine (N)
-0.0
-0.1
-0.1
+0.4
-4.7
vitamin
With vitamins t2
+0.2
+0.3
-0.1
-0.0
-4.7
nitrogen source
nitrogen source nitrite 5mM
+0.3
+0.0
-0.1
+0.1
-4.5
nitrogen source
Glucuronamide (N)
+0.1
+0.2
+0.1
+0.2
-4.6
carbon source
propionate (C)
-0.2
+0.3
+0.9
-0.3
-4.7
carbon source
propionate (C)
-0.1
+0.2
+0.9
-0.1
-4.5
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