Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3925 and Pf6N2E2_3926 are separated by 155 nucleotidesPf6N2E2_3926 and Pf6N2E2_3927 are separated by 1 nucleotidesPf6N2E2_3927 and Pf6N2E2_3928 overlap by 11 nucleotidesPf6N2E2_3928 and Pf6N2E2_3929 are separated by 63 nucleotides Pf6N2E2_3925 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 4,562,010 to 4,563,368 _3925 Pf6N2E2_3926 - Methionine ABC transporter substrate-binding protein, at 4,563,524 to 4,564,351 _3926 Pf6N2E2_3927 - Methionine ABC transporter ATP-binding protein, at 4,564,353 to 4,565,477 _3927 Pf6N2E2_3928 - Methionine ABC transporter permease protein, at 4,565,467 to 4,566,111 _3928 Pf6N2E2_3929 - SAM-dependent methyltransferases, at 4,566,175 to 4,566,801 _3929
Group Condition Pf6N2E2_3925 Pf6N2E2_3926 Pf6N2E2_3927 Pf6N2E2_3928 Pf6N2E2_3929
stress Vancomycin 0.24 mg/ml -0.1 -0.2 -0.2 +0.1 -0.6
carbon source Ying_sugar7 rep C; time point 1 +0.1 +0.2 -0.0 -0.6 -0.6
stress DEANONOate 0.000625 M -0.3 -0.3 -0.0 -0.5 +0.4
stress RCH2 defined with Cobalt chloride 0.04 mM +0.2 -0.4 -0.5 -0.2 +0.2
nitrogen source nitrogen source nitrite 0.5mM +0.0 +0.4 -0.1 -0.3 -0.6
carbon source Carbon source Sucrose 2.5 mM +0.0 -0.5 -0.2 -0.3 +0.4
motility outer cut, LB soft agar motility assay -0.1 -0.6 -0.0 +0.4 -0.1
carbon source Ying_Others16 rep A; time point 1 +0.1 -0.1 +0.3 -0.4 -0.3
stress Nickel (II) chloride 1.5 mM +0.2 -0.1 +0.2 -0.2 -0.5
vitamin No vitamins t2 -0.0 -0.1 -0.7 +0.3 +0.1
nitrogen source nitrogen source Ammonium chloride 20mM +0.2 +0.0 -0.5 +0.1 -0.2
stress perchlorate 0.125 M +0.2 +0.1 -0.2 +0.1 -0.6
nitrogen source nitrogen source nitrite 5mM -0.1 +0.0 -0.5 -0.2 +0.3
stress Vanillyl Alcohol 0.005 M +0.2 -0.2 -0.3 -0.2 +0.3
carbon source Ying_Nucleobase14 rep B; time point 1 +0.0 -0.1 +0.2 -0.5 +0.2
carbon source Ying_Others16 rep C; time point 3 +0.3 -0.1 -0.2 +0.2 -0.3
stress deoxycholate 0.0125 M +0.2 -0.6 -0.1 +0.3 +0.1
stress bromate 0.05 M +0.0 -0.2 +0.4 +0.1 -0.5
carbon source Ying_AminoAcid20 rep C; time point 2 +0.1 +0.2 +0.2 -0.2 -0.4
stress Fusidic 0.4 mg/ml +0.1 -0.3 -0.2 -0.0 +0.5
lb LB no stress 48 hours +0.0 -0.1 +0.4 +0.2 -0.3
carbon source Ying_sugar7 rep C; time point 2 +0.3 +0.4 +0.1 -0.1 -0.5
carbon source Ying_Nucleobase14 rep A; time point 2 +0.1 +0.3 +0.2 +0.1 -0.5
stress thiosulfate 0.25 M +0.1 -0.0 +0.5 +0.1 -0.4
carbon source Ying_Nucleobase14 rep C; time point 1 +0.2 +0.5 -0.1 -0.0 -0.3
stress bromate 0.05 M -0.1 -0.0 +0.4 -0.3 +0.4
stress Nickel (II) chloride 0.0025 M -0.1 +0.2 +0.4 +0.2 -0.2
stress periodate 0.00125 M +0.0 +0.2 +0.3 -0.1 +0.4
nitrogen source L-Serine (N) -0.0 +0.3 +0.2 -0.0 +0.5
nitrogen source nitrogen source nitrate 5mM +0.3 +0.3 +0.6 +0.2 -0.3
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Pf6N2E2_3925
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Pf6N2E2_3926
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Pf6N2E2_3928
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Pf6N2E2_3929
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