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Cofit
Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_3917 and Pf6N2E2_3918 are separated by 404 nucleotides
Pf6N2E2_3918 and Pf6N2E2_3919 are separated by 307 nucleotides
Pf6N2E2_3919 and Pf6N2E2_3920 overlap by 1 nucleotides
Pf6N2E2_3920 and Pf6N2E2_3921 are separated by 3 nucleotides
Pf6N2E2_3917 - High-affinity choline uptake protein BetT, at 4,551,990 to 4,553,993
_3917
Pf6N2E2_3918 - D-cysteine desulfhydrase (EC 4.4.1.15), at 4,554,398 to 4,555,390
_3918
Pf6N2E2_3919 - Cystine ABC transporter, periplasmic cystine-binding protein FliY, at 4,555,698 to 4,556,498
_3919
Pf6N2E2_3920 - Cystine ABC transporter, permease protein, at 4,556,498 to 4,557,163
_3920
Pf6N2E2_3921 - Cystine ABC transporter, ATP-binding protein, at 4,557,167 to 4,557,928
_3921
Group
Condition
Pf6N2E2
_3917
Pf6N2E2
_3918
Pf6N2E2
_3919
Pf6N2E2
_3920
Pf6N2E2
_3921
stress
chromate 0.0000015625 M
+0.3
+0.4
-2.3
-2.2
N.D.
stress
chromate 0.0000015625 M
+0.2
+0.2
-1.8
-1.8
N.D.
stress
sodium iodate 0.005 M
+0.1
-0.0
-1.1
-1.2
N.D.
stress
Chloride 600 mM
-1.3
+0.3
-0.3
-0.3
N.D.
stress
copper (II) chloride 3 mM
-0.3
+0.1
-0.6
-0.7
N.D.
stress
Nickel (II) chloride 0.0025 M
-0.0
+1.0
-1.0
-1.1
N.D.
stress
periodate 0.00125 M
+0.2
+0.4
-0.6
-1.1
N.D.
stress
Nickel (II) chloride 0.0025 M
+0.1
+1.1
-0.8
-1.4
N.D.
stress
Cobalt chloride 0.16 mM
+0.3
+0.7
-1.0
-1.0
N.D.
stress
Cobalt chloride 0.6 mM
+0.5
+1.8
-1.5
-1.6
N.D.
stress
antimonate 0.005 M
-0.1
+0.4
-0.5
-0.5
N.D.
stress
Cobalt chloride 0.6 mM
+0.5
+1.3
-1.1
-1.2
N.D.
stress
Cobalt chloride 0.6 mM
+0.7
+2.1
-1.6
-1.4
N.D.
stress
Cobalt chloride 0.6 mM
+0.5
+1.7
-1.2
-1.2
N.D.
stress
Nickel (II) chloride 1.5 mM
+0.0
+1.0
-0.2
-0.4
N.D.
nitrogen source
L-Serine (N)
-0.3
-0.3
+0.7
+0.7
N.D.
stress
Nickel (II) chloride 1.5 mM
-0.1
+1.2
+0.0
-0.1
N.D.
stress
Nickel (II) chloride 1.5 mM
-0.0
+1.2
+0.2
-0.0
N.D.
stress
bromate 0.05 M
+0.1
-0.0
+0.8
+0.7
N.D.
carbon source
RCH2_defined
-0.1
-0.3
+1.2
+1.2
N.D.
stress
RCH2 defined with Cobalt chloride 0.02 mM
-0.1
-0.2
+1.2
+1.2
N.D.
carbon source
RCH2_defined
+0.0
-0.2
+1.2
+1.3
N.D.
stress
RCH2 defined with Cobalt chloride 0.02 mM
-0.1
-0.1
+1.3
+1.2
N.D.
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-0.1
-0.5
+1.5
+1.6
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.0
-0.3
+1.6
+1.5
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.0
-0.2
+1.6
+1.7
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.3
+1.6
+1.2
+1.0
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.4
+1.6
+1.4
+0.9
N.D.
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.0
-0.1
+1.9
+1.8
N.D.
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.0
-0.1
+2.0
+2.0
N.D.
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Pf6N2E2_3919
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