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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_382 and Pf6N2E2_383 are separated by 1035 nucleotides
Pf6N2E2_383 and Pf6N2E2_384 are separated by 58 nucleotides
Pf6N2E2_384 and Pf6N2E2_385 are separated by 97 nucleotides
Pf6N2E2_385 and Pf6N2E2_386 are separated by 460 nucleotides
Pf6N2E2_382 - RNA:NAD 2'-phosphotransferase, at 449,192 to 449,776
_382
Pf6N2E2_383 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 450,812 to 451,579
_383
Pf6N2E2_384 - Glycine cleavage system transcriptional activator, at 451,638 to 451,979
_384
Pf6N2E2_385 - hypothetical protein, at 452,077 to 452,247
_385
Pf6N2E2_386 - similar to ribulose-1,5-bisphosphate carboxylase, Type III, at 452,708 to 453,985
_386
Group
Condition
Pf6N2E2
_382
Pf6N2E2
_383
Pf6N2E2
_384
Pf6N2E2
_385
Pf6N2E2
_386
stress
bromate 0.05 M
-0.0
-0.4
-3.2
N.D.
-0.2
nitrogen source
nitrogen source nitrite 0.5mM
-0.1
-0.3
-2.4
N.D.
-0.1
stress
sodium iodate 0.005 M
-0.3
-0.8
-0.8
N.D.
-0.2
motility
inner cut, LB soft agar motility assay
+0.1
+0.0
-2.0
N.D.
-0.1
stress
thiosulfate 0.25 M
-0.4
-0.2
-1.2
N.D.
-0.1
carbon source
Ying_Nucleobase14 rep C; time point 3
-0.2
+0.0
-1.5
N.D.
-0.2
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.1
-0.3
-1.3
N.D.
-0.0
carbon source
D-Trehalose (C)
-0.3
-0.0
-1.4
N.D.
+0.0
stress
Hans 100x vitamins
+0.5
-0.4
-1.5
N.D.
-0.2
stress
Hans 1000x minerals
-0.0
-0.2
-1.5
N.D.
+0.2
stress
perchlorate 0.125 M
+0.1
-0.1
-1.3
N.D.
-0.2
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
+0.1
-0.4
-1.1
N.D.
-0.1
stress
Bile salts 0.0125 M
+0.1
-1.4
+0.2
N.D.
-0.3
lb
LB no stress 24 hours
+0.2
+0.1
-1.5
N.D.
-0.1
stress
Cerium(III) chloride 0.000195313 M
+0.1
-0.4
-1.2
N.D.
+0.1
stress
Fluorophosphate 0.125 M
+0.3
-0.2
-1.3
N.D.
+0.0
nitrogen source
Glucuronamide (N)
+0.3
-0.3
-1.0
N.D.
-0.1
lb
LB no stress 48 hours
+0.3
-0.3
-1.3
N.D.
+0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.3
-0.2
-0.8
N.D.
-0.4
carbon source
Ying_Nucleobase14 rep A; time point 3
+0.2
-0.0
-1.1
N.D.
-0.2
stress
Zinc chloride 0.0000015625 M
+0.0
+0.3
-1.4
N.D.
+0.2
stress
RCH2 defined with Cobalt chloride 0.02 mM
+0.0
+0.2
-1.4
N.D.
+0.3
stress
bismuth(III) chloride 0.000025 M
+0.3
-0.1
-1.1
N.D.
+0.2
stress
Hydroxylamine 0.5 M
+0.2
+0.3
-1.1
N.D.
-0.1
carbon source
Carbon source Sucrose 5 mM
+0.1
-0.7
+0.8
N.D.
-0.0
nitrogen source
L-Serine (N)
-0.0
+0.8
-0.6
N.D.
+0.2
nitrogen source
Glucuronamide (N)
+0.3
-0.5
+0.7
N.D.
+0.1
stress
Vancomycin 0.24 mg/ml
-0.2
-0.3
+1.2
N.D.
-0.1
stress
Aluminum chloride 4 mM
-0.2
+0.7
+0.7
N.D.
+0.2
nitrogen source
nitrogen source nitrite 1mM
-0.2
+0.2
+1.9
N.D.
+0.0
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