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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_3814 and Pf6N2E2_3815 overlap by 4 nucleotides
Pf6N2E2_3815 and Pf6N2E2_3816 are separated by 290 nucleotides
Pf6N2E2_3816 and Pf6N2E2_3817 are separated by 253 nucleotides
Pf6N2E2_3817 and Pf6N2E2_3818 are separated by 151 nucleotides
Pf6N2E2_3814 - Probable transmembrane protein, at 4,443,954 to 4,445,330
_3814
Pf6N2E2_3815 - FIG00955932: hypothetical protein, at 4,445,327 to 4,448,950
_3815
Pf6N2E2_3816 - Glycogen phosphorylase (EC 2.4.1.1), at 4,449,241 to 4,451,691
_3816
Pf6N2E2_3817 - FIG00955680: hypothetical protein, at 4,451,945 to 4,452,382
_3817
Pf6N2E2_3818 - GTP-binding protein TypA/BipA, at 4,452,534 to 4,454,354
_3818
Group
Condition
Pf6N2E2
_3814
Pf6N2E2
_3815
Pf6N2E2
_3816
Pf6N2E2
_3817
Pf6N2E2
_3818
carbon source
Ying_Others16 rep B; time point 2
-0.3
+0.2
-1.2
-0.3
N.D.
carbon source
Ying_Others16 rep C; time point 1
-0.2
+0.2
-1.2
-0.1
N.D.
carbon source
Ying_Others16 rep A; time point 1
-0.1
-0.0
-0.9
-0.2
N.D.
carbon source
Ying_Others16 rep C; time point 2
-0.0
-0.0
-0.9
-0.2
N.D.
carbon source
Ying_Nucleobase14 rep C; time point 3
+0.4
-0.1
-1.4
+0.1
N.D.
carbon source
Ying_Others16 rep A; time point 2
+0.1
-0.1
-1.1
+0.0
N.D.
stress
RCH2 defined with Zinc 0.032 mM
-0.1
+0.1
-0.8
-0.2
N.D.
carbon source
Ying_Nucleobase14 rep B; time point 2
+0.3
-0.1
-0.8
-0.4
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.5
+0.0
+0.0
-0.5
N.D.
carbon source
Ying_sugar7 rep C; time point 2
+0.0
+0.1
-0.6
-0.4
N.D.
carbon source
Ying_Others16 rep A; time point 3
+0.2
-0.1
-1.2
+0.2
N.D.
nitrogen source
nitrogen source nitrate 20mM
-0.2
+0.1
-0.3
-0.4
N.D.
carbon source
Ying_Nucleobase14 rep A; time point 3
+0.5
-0.3
-1.2
+0.2
N.D.
carbon source
Ying_Nucleobase14 rep B; time point 3
+0.4
-0.4
-1.1
+0.2
N.D.
nitrogen source
nitrogen source nitrate 20mM
-0.5
+0.2
-0.2
-0.2
N.D.
carbon source
Ying_sugar7 rep B; time point 2
+0.3
+0.0
-0.8
-0.3
N.D.
carbon source
Ying_Others16 rep B; time point 3
+0.3
-0.0
-1.2
+0.3
N.D.
carbon source
Ying_sugar7 rep B; time point 1
+0.4
-0.1
-0.5
-0.3
N.D.
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.4
+0.1
-0.7
-0.2
N.D.
stress
Doxycycline hyclate 0.0001 mg/ml
-0.7
+0.0
+0.0
+0.3
N.D.
nitrogen source
nitrogen source nitrite 5mM
-0.2
+0.2
-0.6
+0.2
N.D.
stress
Chloramphenicol 0.008 mg/ml
-0.6
+0.3
-0.1
-0.1
N.D.
nitrogen source
L-Aspartic Acid (N)
-0.4
+0.0
-0.3
+0.4
N.D.
carbon source
Ying_sugar7 rep C; time point 1
+0.4
-0.0
-0.6
-0.1
N.D.
carbon source
Ying_Others16 rep C; time point 3
+0.3
+0.2
-1.1
+0.4
N.D.
stress
Bile salts 0.0125 M
+0.8
-0.4
-0.2
-0.0
N.D.
stress
Cobalt chloride 0.6 mM
-0.4
+0.3
+0.2
+0.1
N.D.
stress
Hydroxylamine 0.5 M
+0.6
-0.1
+0.3
-0.1
N.D.
stress
dimethyl sulfone 0.25 M
+0.4
-0.1
+0.5
+0.2
N.D.
stress
deoxycholate 0.0125 M
+0.7
-0.2
-0.1
+0.7
N.D.
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