Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3806 and Pf6N2E2_3807 overlap by 4 nucleotidesPf6N2E2_3807 and Pf6N2E2_3808 are separated by 104 nucleotidesPf6N2E2_3808 and Pf6N2E2_3809 are separated by 121 nucleotidesPf6N2E2_3809 and Pf6N2E2_3810 are separated by 109 nucleotides Pf6N2E2_3806 - Conserved hypothetical protein (perhaps related to histidine degradation), at 4,435,983 to 4,436,552 _3806 Pf6N2E2_3807 - Histidine utilization repressor, at 4,436,549 to 4,437,298 _3807 Pf6N2E2_3808 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 4,437,403 to 4,438,767 _3808 Pf6N2E2_3809 - Outer membrane lipoprotein Blc, at 4,438,889 to 4,439,455 _3809 Pf6N2E2_3810 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,439,565 to 4,439,819 _3810
Group Condition Pf6N2E2_3806 Pf6N2E2_3807 Pf6N2E2_3808 Pf6N2E2_3809 Pf6N2E2_3810
nitrogen source L-Histidine (N) -0.4 +0.3 -3.8 +0.2 -0.3
nitrogen source L-Histidine (N) -0.3 +0.5 -3.7 -0.0 -0.5
denitrifying Nitrate reduction, replicate B +0.2 -4.2 -0.1 +0.1 +0.2
carbon source L-Histidine (C) -0.1 +0.9 -4.0 +0.1 -0.6
carbon source L-Histidine (C) +0.0 +1.0 -4.5 +0.0 -0.1
stress antimonate 0.005 M -0.3 -3.0 -0.3 -0.0 +0.2
motility outer cut, LB soft agar motility assay -0.5 -2.9 -0.1 +0.1 +0.4
resistance 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine -0.6 -1.7 +0.1 +0.1 -0.8
nitrogen source nitrogen source nitrite 5mM -0.2 -2.1 -0.1 -0.0 -0.4
motility inner cut, LB soft agar motility assay -0.1 -1.1 -0.5 -0.1 -1.0
motility inner cut, LB soft agar motility assay -0.2 -2.5 -0.3 -0.2 +0.4
nitrogen source Glycine (N) -0.5 -1.7 +0.1 -0.0 -0.6
nitrogen source nitrogen source nitrite 1mM -0.3 -0.8 -0.4 +0.0 -1.1
carbon source Ying_AminoAcid20 rep B; time point 3 -0.3 +0.1 -2.3 -0.1 +0.2
carbon source Ying_AminoAcid20 rep A; time point 3 -0.3 -0.1 -2.3 +0.0 +0.2
denitrifying Nitrate reduction, replicate A +0.4 -2.4 -0.1 +0.1 -0.3
vitamin No vitamins t1 -2.2 -0.5 +0.1 +0.2 +0.2
motility outer cut, LB soft agar motility assay -0.3 -1.9 -0.2 -0.1 +0.3
stress deoxycholate 0.0125 M -2.2 -0.7 +0.4 +0.1 +0.3
nitrogen source L-Serine (N) -0.2 -2.4 +0.0 -0.1 +0.6
resistance 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine -0.6 -1.5 +0.2 +0.1 -0.2
stress periodate 0.00125 M -0.5 -2.6 +0.2 -0.1 +1.0
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B +0.4 -2.1 +0.0 +0.3 -0.4
carbon source Ying_AminoAcid20 rep C; time point 3 +0.1 +0.1 -2.2 -0.0 +0.3
carbon source Ying_AminoAcid20 rep A; time point 2 -0.5 +0.5 -0.8 +0.3 -1.1
nitrogen source nitrogen source nitrite 0.5mM +0.8 -1.6 -0.0 -0.3 -0.4
stress Hydroxylamine 0.5 M -1.1 +1.1 -0.1 -0.7 -0.2
nitrogen source nitrogen source nitrite 5mM +0.8 -1.5 +0.3 -0.0 +0.1
carbon source D-Galactose (C) +0.3 +2.3 -0.1 +0.1 -0.4
carbon source D-Galactose (C) +0.2 +2.6 +0.1 +0.2 -0.2
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