Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3696 and Pf6N2E2_3697 are separated by 133 nucleotidesPf6N2E2_3697 and Pf6N2E2_3698 are separated by 246 nucleotidesPf6N2E2_3698 and Pf6N2E2_3699 are separated by 113 nucleotidesPf6N2E2_3699 and Pf6N2E2_3700 are separated by 3 nucleotides Pf6N2E2_3696 - hypothetical protein, at 4,312,298 to 4,312,576 _3696 Pf6N2E2_3697 - Transcriptional regulator, LysR family, at 4,312,710 to 4,313,576 _3697 Pf6N2E2_3698 - Nicotinamidase family protein YcaC, at 4,313,823 to 4,314,449 _3698 Pf6N2E2_3699 - Thioredoxin, at 4,314,563 to 4,314,985 _3699 Pf6N2E2_3700 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 4,314,989 to 4,316,185 _3700
Group Condition Pf6N2E2_3696 Pf6N2E2_3697 Pf6N2E2_3698 Pf6N2E2_3699 Pf6N2E2_3700
nitrogen source nitrogen source nitrate 5mM -4.4 +0.1 -0.2 +0.2 -0.3
nitrogen source nitrogen source nitrate 20mM -4.4 +0.2 +0.1 -0.1 -0.0
nitrogen source nitrogen source nitrate 20mM -4.3 +0.0 +0.5 -0.1 -0.2
nitrogen source nitrogen source nitrite 5mM -4.5 +0.2 +0.5 +0.0 -0.1
stress Nickel (II) chloride 1.5 mM -2.8 -0.3 -0.3 -0.3 -0.1
lb LB no stress 48 hours -4.2 -0.3 +0.6 +0.1 -0.0
stress RCH2 defined with copper (II) chloride 0.03 mM -3.3 -0.2 -0.0 -0.1 +0.0
stress RCH2 defined with Nickel (II) chloride 0.04 mM -3.3 -0.3 +0.4 -0.1 -0.3
vitamin With vitamins t2 -2.4 -0.0 -0.5 -0.2 -0.1
nitrogen source Gly-Glu (N) -2.8 +0.1 -0.2 +0.0 -0.1
nitrogen source L-Glutamic (N) -1.7 -0.0 -1.0 -0.2 -0.1
nitrogen source L-Asparagine (N) -2.6 -0.3 +0.1 -0.0 -0.0
carbon source Carbon source Sucrose 10 mM -3.0 -0.0 -0.0 +0.3 -0.0
nitrogen source L-Isoleucine (N) -1.4 -0.2 -0.8 -0.1 -0.1
stress Ceftazidime 0.15 mg/ml -1.9 +0.2 -0.5 -0.2 +0.0
stress molybdate 0.25 M -1.7 +0.2 -0.7 -0.3 -0.0
stress RCH2 defined with Nickel (II) chloride 0.04 mM -1.5 +0.1 -0.8 +0.0 +0.0
stress deoxycholate 0.0125 M -3.0 +0.1 +0.9 -0.1 +0.2
carbon source RCH2_defined -2.1 -0.1 +0.2 +0.3 -0.2
carbon source casaminos (C) -1.7 -0.2 +0.4 -0.1 -0.0
stress Spectinomycin 0.01 mg/ml -2.0 +0.0 +0.3 +0.4 +0.0
stress RCH2 defined with copper (II) chloride 0.03 mM -2.0 +0.3 +0.4 +0.0 -0.0
nitrogen source nitrogen source nitrite 5mM -1.4 +0.2 +0.5 -0.3 -0.1
stress Chloride 600 mM -1.7 +0.2 +0.4 -0.1 +0.0
stress RCH2 defined with Cobalt chloride 0.04 mM +0.6 +0.3 -1.5 +0.3 -0.1
motility inner cut, LB soft agar motility assay +0.5 +0.2 -1.1 +0.3 -0.2
carbon source Ying_all64 rep A; time point 3 +1.9 -0.3 +0.1 -0.4 -0.1
carbon source D-Glucosamine Hydrochloride (C) +1.0 -0.5 +0.6 +0.7 -0.2
carbon source Ying_Others16 rep C; time point 3 +1.7 -0.3 +0.2 +0.5 -0.1
carbon source D-Galactose (C) +1.7 -0.0 +0.6 -0.1 +0.2
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