Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3642 and Pf6N2E2_3643 overlap by 32 nucleotidesPf6N2E2_3643 and Pf6N2E2_3644 are separated by 213 nucleotidesPf6N2E2_3644 and Pf6N2E2_3645 are separated by 435 nucleotidesPf6N2E2_3645 and Pf6N2E2_3646 are separated by 193 nucleotides Pf6N2E2_3642 - lipoprotein, putative, at 4,241,289 to 4,242,035 _3642 Pf6N2E2_3643 - Predicted hydroxymethylpyrimidine transporter CytX, at 4,242,004 to 4,243,296 _3643 Pf6N2E2_3644 - Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17), at 4,243,510 to 4,245,399 _3644 Pf6N2E2_3645 - Type I secretion outer membrane protein, TolC precursor, at 4,245,835 to 4,247,274 _3645 Pf6N2E2_3646 - 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-), at 4,247,468 to 4,248,718 _3646
Group Condition Pf6N2E2_3642 Pf6N2E2_3643 Pf6N2E2_3644 Pf6N2E2_3645 Pf6N2E2_3646
carbon source Ying_Nucleobase14 rep B; time point 3 -0.2 -0.5 -2.1 -3.1 N.D.
carbon source Ying_Nucleobase14 rep A; time point 3 -0.3 -0.6 -2.1 -2.7 N.D.
carbon source Ying_Nucleobase14 rep A; time point 2 -0.0 -0.6 -2.2 -2.9 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B -0.8 -0.1 -0.1 -4.7 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A -0.6 -0.3 +0.0 -4.7 N.D.
carbon source Ying_Nucleobase14 rep C; time point 3 -0.2 -0.5 -2.1 -2.7 N.D.
carbon source Ying_Nucleobase14 rep B; time point 2 -0.3 -0.3 -2.0 -2.9 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A -0.5 +0.1 -0.0 -5.0 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate C -0.3 -0.2 +0.1 -5.1 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B +0.1 -0.1 +0.1 -5.3 N.D.
carbon source Ying_Nucleobase14 rep C; time point 2 +0.1 -0.0 -2.2 -3.0 N.D.
denitrifying Nitrate reduction, replicate B -0.1 -0.1 -0.1 -4.5 N.D.
carbon source Ying_Nucleobase14 rep B; time point 1 -0.0 -0.4 -1.5 -2.7 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C +0.1 +0.0 -0.0 -4.7 N.D.
carbon source Ying_AminoAcid20 rep C; time point 2 -1.1 -0.1 +0.2 -3.2 N.D.
carbon source RCH2_defined -0.6 -0.0 +0.2 -3.7 N.D.
carbon source RCH2_defined -0.6 +0.1 -0.0 -3.5 N.D.
carbon source Ying_Nucleobase14 rep C; time point 1 -0.1 -0.0 -1.7 -2.3 N.D.
carbon source Ying_AminoAcid20 rep A; time point 3 -0.1 -0.7 +0.0 -3.2 N.D.
carbon source Ying_AminoAcid20 rep B; time point 3 -0.4 -0.7 +0.2 -2.9 N.D.
carbon source Ying_AminoAcid20 rep C; time point 3 -0.2 -0.5 +0.1 -3.1 N.D.
stress RCH2 defined with Zinc 0.032 mM -0.4 +0.1 +0.1 -3.4 N.D.
vitamin No vitamins t2 -0.1 +0.3 -3.7 -0.1 N.D.
carbon source Ying_all64 rep A; time point 3 -0.6 -0.3 +0.3 -2.8 N.D.
denitrifying Nitrate reduction, replicate A -0.2 +0.0 +0.2 -3.3 N.D.
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.2 -0.4 +0.5 -2.9 N.D.
carbon source Ying_Others16 rep A; time point 3 +0.1 -0.6 +0.2 -2.8 N.D.
carbon source Ying_Others16 rep C; time point 3 +0.1 -0.5 +0.3 -2.8 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 2 +0.1 -0.2 +0.3 -3.1 N.D.
carbon source Ying_Others16 rep C; time point 2 +0.7 -0.3 +0.1 -2.8 N.D.
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