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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_3625 and Pf6N2E2_3626 are separated by 167 nucleotides
Pf6N2E2_3626 and Pf6N2E2_3627 are separated by 42 nucleotides
Pf6N2E2_3627 and Pf6N2E2_3628 are separated by 19 nucleotides
Pf6N2E2_3628 and Pf6N2E2_3629 are separated by 193 nucleotides
Pf6N2E2_3625 - Flagellar motor rotation protein MotA, at 4,220,625 to 4,221,476
_3625
Pf6N2E2_3626 - Predicted signal transduction protein, at 4,221,644 to 4,223,182
_3626
Pf6N2E2_3627 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 4,223,225 to 4,224,040
_3627
Pf6N2E2_3628 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 4,224,060 to 4,224,920
_3628
Pf6N2E2_3629 - DnaK-related protein, at 4,225,114 to 4,226,874
_3629
Group
Condition
Pf6N2E2
_3625
Pf6N2E2
_3626
Pf6N2E2
_3627
Pf6N2E2
_3628
Pf6N2E2
_3629
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+0.3
-0.1
-3.3
N.D.
-0.2
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.4
-0.1
-3.4
N.D.
-0.2
stress
RCH2 defined with Cobalt chloride 0.02 mM
+0.2
+0.1
-3.3
N.D.
+0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.4
-0.2
-3.0
N.D.
-0.1
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+0.4
+0.0
-3.0
N.D.
+0.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.3
+0.1
-2.8
N.D.
-0.1
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.3
+0.2
-2.6
N.D.
-0.1
stress
RCH2 defined with Cobalt chloride 0.02 mM
+0.4
+0.1
-2.6
N.D.
-0.0
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
+0.1
+0.0
-2.1
N.D.
+0.0
carbon source
RCH2_defined
+0.6
+0.1
-2.5
N.D.
-0.0
carbon source
RCH2_defined
+0.5
+0.1
-2.5
N.D.
-0.0
stress
Vancomycin 0.24 mg/ml
-1.6
-0.0
-0.0
N.D.
+0.2
stress
selenite 0.0025 M
+0.2
+0.1
-1.1
N.D.
+0.1
carbon source
L-Leucine (C)
+1.2
+0.1
-0.3
N.D.
+0.0
nitrogen source
L-Lysine (N)
+1.1
+0.3
+0.0
N.D.
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+1.5
+0.2
-0.3
N.D.
+0.0
carbon source
L-Leucine (C)
+1.4
+0.1
+0.1
N.D.
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+1.4
+0.2
-0.1
N.D.
+0.1
nitrogen source
Cytidine (N)
+1.4
+0.1
+0.1
N.D.
+0.0
stress
Hydroxylamine 0.5 M
+0.6
+0.2
+0.9
N.D.
-0.1
stress
Choline Lysine 20 mM
+1.2
+0.1
+0.4
N.D.
+0.0
nitrogen source
Cytidine (N)
+1.4
+0.3
+0.4
N.D.
+0.0
nitrogen source
Glucuronamide (N)
+1.7
+0.3
+0.3
N.D.
+0.1
nitrogen source
L-Serine (N)
+2.1
+0.2
+0.1
N.D.
+0.2
nitrogen source
L-Serine (N)
+1.9
+0.2
+0.5
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
+4.7
+1.2
+0.5
N.D.
-0.4
motility
outer cut, LB soft agar motility assay
+4.9
+0.9
+0.5
N.D.
+0.1
motility
inner cut, LB soft agar motility assay
+5.4
+1.1
+0.7
N.D.
+0.0
motility
inner cut, LB soft agar motility assay
+6.7
+1.5
+0.6
N.D.
-0.2
motility
inner cut, LB soft agar motility assay
+7.5
+2.0
+0.7
N.D.
+0.1
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