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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_3584 and Pf6N2E2_3585 are separated by 229 nucleotides
Pf6N2E2_3585 and Pf6N2E2_3586 are separated by 4 nucleotides
Pf6N2E2_3586 and Pf6N2E2_3587 are separated by 319 nucleotides
Pf6N2E2_3587 and Pf6N2E2_3588 are separated by 143 nucleotides
Pf6N2E2_3584 - Transcriptional regulator, LysR family, at 4,175,500 to 4,176,408
_3584
Pf6N2E2_3585 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 4,176,638 to 4,177,864
_3585
Pf6N2E2_3586 - NAD synthetase (EC 6.3.1.5), at 4,177,869 to 4,178,696
_3586
Pf6N2E2_3587 - Azurin, at 4,179,016 to 4,179,462
_3587
Pf6N2E2_3588 - hypothetical protein, at 4,179,606 to 4,179,743
_3588
Group
Condition
Pf6N2E2
_3584
Pf6N2E2
_3585
Pf6N2E2
_3586
Pf6N2E2
_3587
Pf6N2E2
_3588
motility
inner cut, LB soft agar motility assay
-0.2
-0.1
-2.3
-1.9
+0.7
motility
outer cut, LB soft agar motility assay
-0.2
-0.0
-0.9
-0.7
-1.9
nitrogen source
nitrogen source nitrite 5mM
-0.1
+0.1
-0.8
-2.3
-0.5
nitrogen source
L-Isoleucine (N)
+0.1
-0.2
-2.3
-0.5
-0.3
nitrogen source
Gly-Glu (N)
-0.0
+0.0
-2.0
-0.9
-0.1
nitrogen source
L-Isoleucine (N)
+0.0
-0.0
-2.6
-0.2
-0.0
motility
outer cut, LB soft agar motility assay
-0.2
+0.1
-1.3
+0.0
-1.1
nitrogen source
nitrogen source nitrate 5mM
-0.1
-0.2
-0.4
-2.3
+0.6
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.0
-0.1
-0.3
-1.7
-0.2
stress
pyrophosphate 0.0025 M
-0.0
-0.2
+0.3
-2.1
-0.3
nitrogen source
nitrogen source nitrate 5mM
-0.0
-0.0
-0.6
-2.0
+0.5
stress
antimonate 0.005 M
+0.0
-0.3
-0.1
-0.4
-1.3
nitrogen source
nitrogen source nitrite 1mM
-0.0
-0.0
-0.6
-2.0
+0.6
motility
inner cut, LB soft agar motility assay
-0.0
+0.3
-1.3
-1.0
+0.0
nitrogen source
nitrogen source nitrite 5mM
-0.2
-0.1
-0.9
-1.0
+0.4
stress
phosphite 0.25 M
-0.1
-0.3
-1.0
-0.8
+0.4
stress
Cobalt chloride 0.6 mM
+0.3
-0.4
-1.0
-0.8
+0.2
nitrogen source
nitrogen source nitrite 1mM
-0.1
-0.4
-0.7
-0.8
+0.4
nitrogen source
L-Serine (N)
-0.0
+0.5
-0.7
-0.3
-0.8
nitrogen source
nitrogen source nitrate 20mM
-0.3
-0.2
-0.4
-1.0
+0.6
nitrogen source
Gly-Glu (N)
-0.1
+0.1
-1.6
-0.0
+0.4
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.1
+0.3
-0.5
-1.1
+0.2
stress
4-Hydroxyacetophenone 0.00025 M
-0.3
+0.1
-0.4
-0.9
+0.7
stress
sodium iodate 0.005 M
+0.1
-0.1
+0.3
-1.8
+1.0
stress
Nickel (II) chloride 0.0025 M
+0.0
+0.2
-0.9
-0.5
+0.6
motility
inner cut, LB soft agar motility assay
-0.1
+0.4
-1.0
-0.3
+0.8
nitrogen source
Cytosine (N)
+0.0
+0.3
-0.5
-0.7
+0.7
carbon source
Ying_all64 rep C; time point 3
-0.1
+0.2
+0.4
-0.5
+1.4
stress
bromate 0.05 M
-0.1
+0.2
+0.8
-0.2
+1.0
stress
Chlorite 0.00005 M
+0.0
+0.3
+0.3
+1.8
+0.0
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