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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_3531 and Pf6N2E2_3532 overlap by 1 nucleotides
Pf6N2E2_3532 and Pf6N2E2_3533 overlap by 4 nucleotides
Pf6N2E2_3533 and Pf6N2E2_3534 overlap by 8 nucleotides
Pf6N2E2_3534 and Pf6N2E2_3535 are separated by 390 nucleotides
Pf6N2E2_3531 - Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase, at 4,121,025 to 4,122,713
_3531
Pf6N2E2_3532 - Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130), at 4,122,713 to 4,123,447
_3532
Pf6N2E2_3533 - Cobalt-precorrin-8x methylmutase (EC 5.4.1.2), at 4,123,444 to 4,124,070
_3533
Pf6N2E2_3534 - Cobalamin biosynthesis protein CobG, at 4,124,063 to 4,125,331
_3534
Pf6N2E2_3535 - Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-), at 4,125,722 to 4,126,933
_3535
Group
Condition
Pf6N2E2
_3531
Pf6N2E2
_3532
Pf6N2E2
_3533
Pf6N2E2
_3534
Pf6N2E2
_3535
nitrogen source
L-Glutamine (N)
-1.3
-1.6
-0.9
-4.2
-1.0
nitrogen source
L-Histidine (N)
-1.3
-1.4
-1.3
-3.3
-1.5
nitrogen source
L-Proline (N)
-1.6
-1.5
-1.7
-2.3
-1.6
nitrogen source
L-Proline (N)
-1.1
-2.1
-1.6
-1.9
-1.9
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
-1.4
-1.6
-1.0
-2.6
-1.5
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
-1.4
-1.2
-2.5
-1.6
-1.3
stress
Nickel (II) chloride 0.0025 M
-0.8
-0.7
-1.5
-2.9
-1.8
carbon source
octanoate (C)
-1.5
-2.0
-1.7
-1.2
-1.2
nitrogen source
L-Glutamine (N)
-1.2
-1.0
-1.1
-2.3
-1.4
stress
dimethyl sulfone 0.25 M
-0.9
-0.9
-0.3
-2.9
-1.8
nitrogen source
L-Asparagine (N)
-0.7
-1.4
-0.8
-1.8
-1.5
carbon source
propionate (C)
-0.8
-1.2
-1.6
-1.5
-1.1
nitrogen source
L-Asparagine (N)
-0.7
-1.0
-1.9
-1.4
-1.0
vitamin
No vitamins t2
-0.9
-0.8
-0.9
-1.4
-2.1
carbon source
propionate (C)
-1.3
-0.9
-1.4
-1.2
-1.1
nitrogen source
L-Histidine (N)
-0.7
-1.2
-0.9
-2.0
-1.1
stress
Nickel (II) chloride 0.0025 M
-0.7
-1.2
-0.2
-2.1
-1.6
carbon source
octanoate (C)
-1.3
-0.9
-1.0
-0.9
-1.3
carbon source
L-Glutamine (C)
-0.8
-0.8
-1.4
-1.7
-0.7
nitrogen source
Ammonium chloride (N)
-0.7
-1.0
-0.8
-1.5
-1.3
nitrogen source
nitrogen source nitrite 0.5mM
-0.5
-0.9
-2.0
-1.6
-0.2
carbon source
L-Glutamine (C)
-1.0
-1.0
-1.0
-1.2
-0.8
carbon source
L-Malic (C)
-0.7
-0.8
-1.6
-1.3
-0.7
carbon source
D-Glucose (C)
-0.5
-0.3
-1.0
-3.0
-0.1
nitrogen source
Putrescine (N)
-0.6
-1.0
-1.0
-1.0
-1.0
carbon source
D,L-Lactate (C)
-0.3
-0.8
-1.1
-1.8
-0.7
nitrogen source
Ammonium chloride (N)
-0.8
-0.8
-0.9
-1.5
-0.6
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.4
-0.8
-1.3
-1.9
-0.7
carbon source
D-Galactose (C)
+1.2
+1.2
+0.9
+1.7
+1.0
carbon source
D-Galactose (C)
+1.4
+1.2
+1.2
+1.8
+1.0
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