Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3439 and Pf6N2E2_3440 are separated by 1 nucleotidesPf6N2E2_3440 and Pf6N2E2_3441 are separated by 27 nucleotidesPf6N2E2_3441 and Pf6N2E2_3442 are separated by 139 nucleotidesPf6N2E2_3442 and Pf6N2E2_3443 are separated by 33 nucleotides Pf6N2E2_3439 - N-acyl-D-amino-acid deacylase (EC 3.5.1.81), at 4,007,904 to 4,009,376 _3439 Pf6N2E2_3440 - Transcriptional regulator, RpiR family, at 4,009,378 to 4,010,238 _3440 Pf6N2E2_3441 - Gluconate transporter family protein, at 4,010,266 to 4,011,615 _3441 Pf6N2E2_3442 - hypothetical protein, at 4,011,755 to 4,011,916 _3442 Pf6N2E2_3443 - Sulfate permease, at 4,011,950 to 4,013,395 _3443
Group Condition Pf6N2E2_3439 Pf6N2E2_3440 Pf6N2E2_3441 Pf6N2E2_3442 Pf6N2E2_3443
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.0 -0.7 -1.3 N.D. -0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.1 -0.3 -1.1 N.D. -0.5
carbon source Ying_all64 rep B; time point 3 +0.0 -0.4 -1.2 N.D. -0.2
carbon source Ying_all64 rep A; time point 3 +0.1 -1.1 -0.7 N.D. +0.0
carbon source Ying_Nucleobase14 rep C; time point 3 -0.0 -0.3 -0.8 N.D. -0.4
carbon source Ying_Others16 rep B; time point 3 -0.4 -0.3 -0.6 N.D. -0.2
carbon source Ying_Others16 rep C; time point 3 -0.2 -1.0 -0.3 N.D. -0.0
carbon source propionate (C) -0.2 -1.1 -0.1 N.D. -0.0
carbon source Ying_all64 rep C; time point 3 -0.0 -0.2 -0.7 N.D. -0.4
stress DEANONOate 0.000625 M +0.2 -0.2 -1.0 N.D. -0.2
nitrogen source nitrogen source nitrate 5mM -0.5 -0.7 +0.3 N.D. -0.2
stress sodium iodate 0.005 M +0.2 -0.4 -0.6 N.D. -0.2
stress Cobalt chloride 0.6 mM +0.0 -0.8 -0.4 N.D. +0.3
nitrogen source L-Asparagine (N) -0.2 +0.3 +0.0 N.D. -0.9
stress deoxycholate 0.0125 M -0.1 -0.3 -0.7 N.D. +0.7
nitrogen source L-Histidine (N) -0.3 +0.4 -0.7 N.D. +0.1
lb LB no stress 48 hours -0.4 -0.1 +0.5 N.D. -0.4
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.2 +0.0 -0.7 N.D. +0.6
stress RCH2 defined with copper (II) chloride 0.03 mM +0.2 +0.4 -0.0 N.D. -0.8
nitrogen source nitrogen source nitrate 20mM +0.1 +0.5 -0.5 N.D. -0.4
stress Hydroxylamine 0.5 M +0.3 -0.7 +0.3 N.D. -0.1
stress Chloride 600 mM +0.4 -0.1 -0.7 N.D. +0.3
carbon source Ying_sugar7 rep B; time point 2 -0.4 -0.2 +0.7 N.D. -0.1
stress Bile salts 0.0125 M +0.7 -0.4 +0.4 N.D. -0.7
nitrogen source L-Proline (N) +0.1 +0.7 -0.0 N.D. -0.5
stress Doxycycline hyclate 0.0001 mg/ml +0.2 -0.6 +0.2 N.D. +0.4
nitrogen source nitrate (N) +0.1 +0.8 -0.4 N.D. -0.0
carbon source Ying_Others16 rep C; time point 1 -0.2 +0.2 +0.5 N.D. +0.5
stress Aluminum chloride 4 mM +0.1 +0.2 +0.4 N.D. +0.7
stress RCH2 defined with Cobalt chloride 0.04 mM +0.1 +0.4 +0.5 N.D. +0.4
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