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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_3391 and Pf6N2E2_3392 are separated by 5659 nucleotides
Pf6N2E2_3392 and Pf6N2E2_3393 are separated by 657 nucleotides
Pf6N2E2_3393 and Pf6N2E2_3394 are separated by 41 nucleotides
Pf6N2E2_3394 and Pf6N2E2_3395 are separated by 427 nucleotides
Pf6N2E2_3391 - hypothetical protein, at 3,924,800 to 3,924,958
_3391
Pf6N2E2_3392 - Thermostable 8-oxoguanine DNA glycosylase, at 3,930,618 to 3,931,388
_3392
Pf6N2E2_3393 - Queuosine Biosynthesis QueC ATPase, at 3,932,046 to 3,932,606
_3393
Pf6N2E2_3394 - Ribokinase (EC 2.7.1.15), at 3,932,648 to 3,933,865
_3394
Pf6N2E2_3395 - hypothetical protein, at 3,934,293 to 3,936,311
_3395
Group
Condition
Pf6N2E2
_3391
Pf6N2E2
_3392
Pf6N2E2
_3393
Pf6N2E2
_3394
Pf6N2E2
_3395
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.4
+0.3
-1.3
-0.4
-0.0
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.6
+0.2
-1.3
-0.1
+0.0
nitrogen source
Urea (N)
+0.1
+0.1
-1.5
-0.5
+0.0
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.2
+0.1
-1.3
-0.3
-0.1
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.3
+0.1
-1.3
-0.2
-0.1
resistance
20 mM putrescine
-0.1
+0.2
-1.4
-0.3
-0.0
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.1
+0.2
-1.2
-0.4
-0.1
nitrogen source
Gly-Glu (N)
-0.2
-0.3
-0.7
-0.1
-0.1
nitrogen source
nitrogen source nitrite 0.5mM
-0.7
-0.2
-0.1
-0.1
-0.3
motility
inner cut, LB soft agar motility assay
-0.3
-0.6
-0.4
+0.1
+0.0
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.0
+0.4
-1.3
-0.2
-0.0
stress
bromate 0.05 M
-0.7
-0.3
+0.2
-0.2
+0.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.3
-0.0
-0.6
-0.1
-0.4
nitrogen source
L-Glutamic (N)
+0.2
-0.5
-0.5
+0.2
-0.0
nitrogen source
nitrogen source nitrate 5mM
-0.4
-0.3
+0.4
-0.3
-0.1
nitrogen source
L-Phenylalanine (N)
+0.3
+0.1
-0.9
-0.0
+0.0
nitrogen source
Glucuronamide (N)
+0.2
+0.1
-0.7
-0.4
+0.1
nitrogen source
Glycine (N)
+0.4
+0.1
-0.8
-0.0
-0.1
nitrogen source
Cytosine (N)
+0.4
+0.2
-0.9
-0.1
+0.0
stress
Bile salts 0.0125 M
-0.7
+0.1
+0.5
+0.1
-0.2
stress
Hydroxylamine 0.5 M
-0.3
+0.5
-0.7
+0.2
+0.2
carbon source
octanoate (C)
+0.6
+0.0
-0.6
-0.0
-0.0
carbon source
Ying_Others16 rep C; time point 2
+0.2
-0.1
-0.5
+0.3
+0.2
carbon source
D-Trehalose (C)
+0.5
+0.3
-0.6
+0.1
-0.2
nitrogen source
L-Phenylalanine (N)
+0.3
+0.3
-0.6
-0.0
+0.2
stress
Cobalt chloride 0.6 mM
+0.5
-0.5
+0.3
+0.3
-0.1
stress
Nickel (II) chloride 0.0025 M
+0.3
-0.3
+0.4
+0.3
-0.0
stress
4-Hydroxyacetophenone 0.00025 M
+0.2
-0.2
+0.4
+0.3
-0.1
nitrogen source
Gly-Glu (N)
+0.9
-0.0
-0.2
+0.2
+0.1
nitrogen source
L-Serine (N)
+0.5
+0.6
+0.2
+0.1
+0.1
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