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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_3361 and Pf6N2E2_3362 are separated by 10 nucleotides
Pf6N2E2_3362 and Pf6N2E2_3363 are separated by 28 nucleotides
Pf6N2E2_3363 and Pf6N2E2_3364 overlap by 4 nucleotides
Pf6N2E2_3364 and Pf6N2E2_3365 are separated by 105 nucleotides
Pf6N2E2_3361 - FIG004454: RNA binding protein, at 3,892,505 to 3,892,813
_3361
Pf6N2E2_3362 - hypothetical protein, at 3,892,824 to 3,893,228
_3362
Pf6N2E2_3363 - Transcription elongation factor GreA, at 3,893,257 to 3,893,739
_3363
Pf6N2E2_3364 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 3,893,736 to 3,896,957
_3364
Pf6N2E2_3365 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 3,897,063 to 3,898,199
_3365
Group
Condition
Pf6N2E2
_3361
Pf6N2E2
_3362
Pf6N2E2
_3363
Pf6N2E2
_3364
Pf6N2E2
_3365
stress
Chlorite 0.00005 M
N.D.
-1.5
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.4 mM
N.D.
-0.9
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 0.0025 M
N.D.
-0.8
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.6 mM
N.D.
-0.8
N.D.
N.D.
N.D.
vitamin
No vitamins t2
N.D.
-0.8
N.D.
N.D.
N.D.
nitrogen source
L-Asparagine (N)
N.D.
-0.7
N.D.
N.D.
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
-0.7
N.D.
N.D.
N.D.
stress
Choline Lysine 20 mM
N.D.
-0.6
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 1.5 mM
N.D.
-0.6
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
N.D.
+0.6
N.D.
N.D.
N.D.
nitrogen source
Parabanic Acid (N)
N.D.
+0.6
N.D.
N.D.
N.D.
stress
Fluorophosphate 0.125 M
N.D.
+0.6
N.D.
N.D.
N.D.
stress
Aluminum chloride 2 mM
N.D.
+0.6
N.D.
N.D.
N.D.
stress
sodium iodate 0.005 M
N.D.
+0.6
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
+0.6
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
N.D.
+0.6
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
N.D.
+0.7
N.D.
N.D.
N.D.
carbon source
Putrescine (C)
N.D.
+0.7
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
N.D.
+0.7
N.D.
N.D.
N.D.
stress
Zinc chloride 0.0000015625 M
N.D.
+0.7
N.D.
N.D.
N.D.
carbon source
D-Alanine (C)
N.D.
+0.7
N.D.
N.D.
N.D.
stress
Vancomycin 0.12 mg/ml
N.D.
+0.7
N.D.
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
N.D.
+0.7
N.D.
N.D.
N.D.
stress
Chloride 600 mM
N.D.
+0.8
N.D.
N.D.
N.D.
nitrogen source
nitrogen source nitrite 1mM
N.D.
+0.8
N.D.
N.D.
N.D.
stress
Bile salts 0.0125 M
N.D.
+0.8
N.D.
N.D.
N.D.
stress
Aluminum chloride 4 mM
N.D.
+0.8
N.D.
N.D.
N.D.
stress
antimonate 0.005 M
N.D.
+0.8
N.D.
N.D.
N.D.
stress
rubidium chloride 0.25 M
N.D.
+1.0
N.D.
N.D.
N.D.
nitrogen source
L-Serine (N)
N.D.
+1.5
N.D.
N.D.
N.D.
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