Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3346 and Pf6N2E2_3347 are separated by 98 nucleotidesPf6N2E2_3347 and Pf6N2E2_3348 are separated by 305 nucleotidesPf6N2E2_3348 and Pf6N2E2_6117 are separated by 13 nucleotidesPf6N2E2_6117 and Pf6N2E2_3349 are separated by 125 nucleotides Pf6N2E2_3346 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 3,874,739 to 3,875,587 _3346 Pf6N2E2_3347 - FIG00957702: hypothetical protein, at 3,875,686 to 3,875,991 _3347 Pf6N2E2_3348 - hypothetical protein, at 3,876,297 to 3,876,845 _3348 Pf6N2E2_6117 - tRNA-Thr-CGT, at 3,876,859 to 3,876,931 _6117 Pf6N2E2_3349 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 3,877,057 to 3,879,162 _3349
Group Condition Pf6N2E2_3346 Pf6N2E2_3347 Pf6N2E2_3348 Pf6N2E2_6117 Pf6N2E2_3349
carbon source octanoate (C) -3.5 -0.4 -0.0 N.D. -4.0
nitrogen source L-Arginine (N) -3.8 -0.1 +0.1 N.D. -4.0
carbon source D-Galactose (C) -3.3 +0.2 +0.4 N.D. -3.5
carbon source L-Alanine (C) -2.9 +0.2 +0.1 N.D. -3.6
carbon source octanoate (C) -3.8 -0.2 +0.4 N.D. -2.5
carbon source D-Gluconic Acid (C) -3.7 -0.1 +0.0 N.D. -2.1
nitrogen source Glucuronamide (N) -2.1 +0.1 -0.0 N.D. -3.8
nitrogen source L-Arginine (N) -3.5 +0.0 -0.2 N.D. -2.1
carbon source D-Gluconic Acid (C) -3.6 -0.1 +0.4 N.D. -2.3
carbon source Putrescine (C) -0.5 -0.4 +0.4 N.D. -4.9
carbon source Putrescine (C) -0.3 -0.3 -0.0 N.D. -4.4
carbon source Tween 20 (C) -3.8 +0.1 +0.5 N.D. -1.5
carbon source D-Glucose (C) -2.8 +0.0 +0.4 N.D. -2.3
carbon source L-Histidine (C) -2.5 -0.3 -0.0 N.D. -1.9
carbon source Ying_AminoAcid20 rep C; time point 3 -3.5 +0.3 +0.0 N.D. -1.2
carbon source L-Malic (C) -2.3 -0.2 +0.1 N.D. -2.0
carbon source D-Sorbitol (C) -2.5 -0.1 +0.5 N.D. -2.3
carbon source D-Glucose (C) -3.4 +0.1 +0.1 N.D. -1.0
carbon source L-Histidine (C) -1.6 -0.4 +0.2 N.D. -2.4
carbon source m-Inositol (C) -2.4 -0.1 +0.4 N.D. -2.0
carbon source L-Alanine (C) -2.9 -0.0 +0.1 N.D. -1.3
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A -3.5 +0.2 +0.2 N.D. -0.8
nitrogen source L-Asparagine (N) -2.0 -0.1 +0.2 N.D. -1.9
carbon source Ying_OrganicAcid7 rep B; time point 3 -2.8 +0.3 +0.0 N.D. -1.3
carbon source Ying_AminoAcid20 rep A; time point 3 -2.7 +0.2 +0.1 N.D. -1.2
carbon source Trisodium citrate (C) -0.9 -0.0 +0.4 N.D. -2.9
nitrogen source L-Lysine (N) -2.6 +0.2 +0.2 N.D. -1.3
motility inner cut, LB soft agar motility assay +1.4 -0.1 -0.1 N.D. -3.3
carbon source L-Leucine (C) +1.0 +0.3 -0.1 N.D. -3.1
carbon source D-Fructose (C) +3.4 -0.8 -0.2 N.D. -1.0
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