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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_3314 and Pf6N2E2_3315 are separated by 329 nucleotides
Pf6N2E2_3315 and Pf6N2E2_3316 are separated by 57 nucleotides
Pf6N2E2_3316 and Pf6N2E2_3317 are separated by 60 nucleotides
Pf6N2E2_3317 and Pf6N2E2_3318 are separated by 8 nucleotides
Pf6N2E2_3314 - Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2), at 3,828,557 to 3,829,537
_3314
Pf6N2E2_3315 - hypothetical protein, at 3,829,867 to 3,830,307
_3315
Pf6N2E2_3316 - Fe-S oxidoreductase, at 3,830,365 to 3,832,605
_3316
Pf6N2E2_3317 - Ornithine cyclodeaminase (EC 4.3.1.12), at 3,832,666 to 3,833,715
_3317
Pf6N2E2_3318 - putative non-ribosomal peptide synthetase, at 3,833,724 to 3,835,010
_3318
Group
Condition
Pf6N2E2
_3314
Pf6N2E2
_3315
Pf6N2E2
_3316
Pf6N2E2
_3317
Pf6N2E2
_3318
nitrogen source
Gly-Glu (N)
-3.8
+0.2
+0.2
+0.2
+0.2
nitrogen source
Gly-Glu (N)
-2.3
-0.2
+0.2
+0.3
+0.2
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.1
-0.8
-0.0
-0.0
-0.3
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
-0.8
-0.3
-0.0
-0.1
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.0
-0.6
+0.1
-0.1
-0.5
nitrogen source
nitrogen source nitrite 0.5mM
-0.2
+0.3
-0.2
-0.4
-0.3
stress
Bile salts 0.0125 M
+0.3
-0.5
+0.0
+0.0
-0.5
carbon source
L-Histidine (C)
-0.9
+0.3
+0.0
+0.1
+0.0
nitrogen source
L-Isoleucine (N)
-0.6
-0.2
+0.2
+0.2
+0.1
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
+0.8
+0.1
+0.0
-0.2
-0.2
carbon source
Ying_sugar7 rep B; time point 2
+0.2
+0.4
-0.0
-0.2
+0.4
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.9
+0.1
+0.1
-0.1
-0.1
stress
thiosulfate 0.25 M
+0.1
+0.7
+0.1
-0.4
+0.2
nitrogen source
Cytidine (N)
+0.5
-0.2
+0.3
+0.1
+0.2
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+1.2
-0.0
+0.0
+0.0
-0.1
carbon source
Trisodium citrate (C)
+1.2
-0.2
+0.2
-0.1
+0.2
nitrogen source
L-Phenylalanine (N)
+0.9
+0.2
+0.2
+0.1
-0.0
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+1.5
+0.0
+0.1
-0.2
-0.0
stress
Nickel (II) chloride 0.0025 M
-0.4
-0.5
+0.2
+1.3
+0.8
stress
Nickel (II) chloride 0.0025 M
-0.1
-0.0
+0.1
+1.2
+0.7
stress
Cobalt chloride 0.6 mM
-0.2
-0.1
+0.2
+1.5
+0.7
stress
Cobalt chloride 0.4 mM
-0.1
+0.1
+0.0
+1.3
+0.7
stress
Cobalt chloride 0.4 mM
-0.1
+0.0
+0.2
+1.3
+0.6
stress
Cobalt chloride 0.4 mM
+0.2
+0.0
+0.1
+1.2
+0.6
stress
Cobalt chloride 0.6 mM
-0.1
+0.0
+0.2
+1.5
+0.8
stress
Cobalt chloride 0.4 mM
-0.1
+0.5
+0.1
+1.3
+0.6
stress
Cobalt chloride 0.6 mM
-0.2
-0.0
+0.4
+2.0
+1.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.1
+0.2
+0.1
+2.0
+0.9
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.0
-0.3
+0.4
+2.1
+1.2
stress
Cobalt chloride 0.6 mM
-0.2
+0.2
+0.3
+2.1
+1.1
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