Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3314 and Pf6N2E2_3315 are separated by 329 nucleotidesPf6N2E2_3315 and Pf6N2E2_3316 are separated by 57 nucleotidesPf6N2E2_3316 and Pf6N2E2_3317 are separated by 60 nucleotidesPf6N2E2_3317 and Pf6N2E2_3318 are separated by 8 nucleotides Pf6N2E2_3314 - Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2), at 3,828,557 to 3,829,537 _3314 Pf6N2E2_3315 - hypothetical protein, at 3,829,867 to 3,830,307 _3315 Pf6N2E2_3316 - Fe-S oxidoreductase, at 3,830,365 to 3,832,605 _3316 Pf6N2E2_3317 - Ornithine cyclodeaminase (EC 4.3.1.12), at 3,832,666 to 3,833,715 _3317 Pf6N2E2_3318 - putative non-ribosomal peptide synthetase, at 3,833,724 to 3,835,010 _3318
Group Condition Pf6N2E2_3314 Pf6N2E2_3315 Pf6N2E2_3316 Pf6N2E2_3317 Pf6N2E2_3318
nitrogen source Gly-Glu (N) -3.8 +0.2 +0.2 +0.2 +0.2
nitrogen source Gly-Glu (N) -2.3 -0.2 +0.2 +0.3 +0.2
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.1 -0.8 -0.0 -0.0 -0.3
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A -0.8 -0.3 -0.0 -0.1 -0.1
carbon source Ying_AminoAcid20 rep B; time point 3 +0.0 -0.6 +0.1 -0.1 -0.5
nitrogen source nitrogen source nitrite 0.5mM -0.2 +0.3 -0.2 -0.4 -0.3
stress Bile salts 0.0125 M +0.3 -0.5 +0.0 +0.0 -0.5
carbon source L-Histidine (C) -0.9 +0.3 +0.0 +0.1 +0.0
nitrogen source L-Isoleucine (N) -0.6 -0.2 +0.2 +0.2 +0.1
stress RCH2 defined with Thallium(I) acetate 0.002 mg/ml +0.8 +0.1 +0.0 -0.2 -0.2
carbon source Ying_sugar7 rep B; time point 2 +0.2 +0.4 -0.0 -0.2 +0.4
stress RCH2 defined with copper (II) chloride 0.03 mM +0.9 +0.1 +0.1 -0.1 -0.1
stress thiosulfate 0.25 M +0.1 +0.7 +0.1 -0.4 +0.2
nitrogen source Cytidine (N) +0.5 -0.2 +0.3 +0.1 +0.2
stress RCH2 defined with Nickel (II) chloride 0.04 mM +1.2 -0.0 +0.0 +0.0 -0.1
carbon source Trisodium citrate (C) +1.2 -0.2 +0.2 -0.1 +0.2
nitrogen source L-Phenylalanine (N) +0.9 +0.2 +0.2 +0.1 -0.0
stress RCH2 defined with Nickel (II) chloride 0.04 mM +1.5 +0.0 +0.1 -0.2 -0.0
stress Nickel (II) chloride 0.0025 M -0.4 -0.5 +0.2 +1.3 +0.8
stress Nickel (II) chloride 0.0025 M -0.1 -0.0 +0.1 +1.2 +0.7
stress Cobalt chloride 0.6 mM -0.2 -0.1 +0.2 +1.5 +0.7
stress Cobalt chloride 0.4 mM -0.1 +0.1 +0.0 +1.3 +0.7
stress Cobalt chloride 0.4 mM -0.1 +0.0 +0.2 +1.3 +0.6
stress Cobalt chloride 0.4 mM +0.2 +0.0 +0.1 +1.2 +0.6
stress Cobalt chloride 0.6 mM -0.1 +0.0 +0.2 +1.5 +0.8
stress Cobalt chloride 0.4 mM -0.1 +0.5 +0.1 +1.3 +0.6
stress Cobalt chloride 0.6 mM -0.2 -0.0 +0.4 +2.0 +1.0
stress RCH2 defined with Cobalt chloride 0.04 mM -0.1 +0.2 +0.1 +2.0 +0.9
stress RCH2 defined with Cobalt chloride 0.04 mM -0.0 -0.3 +0.4 +2.1 +1.2
stress Cobalt chloride 0.6 mM -0.2 +0.2 +0.3 +2.1 +1.1
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