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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_3282 and Pf6N2E2_3283 are separated by 60 nucleotides
Pf6N2E2_3283 and Pf6N2E2_3284 are separated by 56 nucleotides
Pf6N2E2_3284 and Pf6N2E2_3285 are separated by 183 nucleotides
Pf6N2E2_3285 and Pf6N2E2_3286 overlap by 4 nucleotides
Pf6N2E2_3282 - FIG005080: Possible exported protein, at 3,785,682 to 3,789,485
_3282
Pf6N2E2_3283 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 3,789,546 to 3,791,003
_3283
Pf6N2E2_3284 - Septum formation protein Maf, at 3,791,060 to 3,791,656
_3284
Pf6N2E2_3285 - Rod shape-determining protein MreD, at 3,791,840 to 3,792,328
_3285
Pf6N2E2_3286 - Rod shape-determining protein MreC, at 3,792,325 to 3,793,446
_3286
Group
Condition
Pf6N2E2
_3282
Pf6N2E2
_3283
Pf6N2E2
_3284
Pf6N2E2
_3285
Pf6N2E2
_3286
stress
Hydroxylamine 0.5 M
-1.4
-0.3
-0.0
-6.2
N.D.
stress
tungstate 0.05 M
-3.5
+0.1
-0.1
-2.3
N.D.
nitrogen source
L-Isoleucine (N)
-3.0
-1.7
-0.2
-0.7
N.D.
stress
Gjerstad humics 0.5 M
-3.4
-1.5
-0.1
-0.4
N.D.
motility
inner cut, LB soft agar motility assay
-1.9
-1.3
-0.3
-1.9
N.D.
stress
L-Lysine 25 mM
+0.1
-0.1
+0.0
-5.3
N.D.
stress
copper (II) chloride 3 mM
-5.3
+0.9
+0.2
-0.8
N.D.
stress
tungstate 0.05 M
-2.5
+0.4
-0.1
-2.5
N.D.
stress
Chloride 0.5 M
-3.5
-0.4
-0.1
-0.7
N.D.
stress
DEANONOate 0.000625 M
+0.1
-2.9
-1.2
-0.4
N.D.
stress
Aluminum chloride 2 mM
-3.9
+0.3
-0.1
-0.2
N.D.
stress
Choline Lysine 20 mM
+0.6
+0.4
-0.4
-4.5
N.D.
nitrogen source
Glucuronamide (N)
-2.8
+0.4
+0.2
-1.5
N.D.
stress
molybdate 0.25 M
-3.3
+1.4
+0.2
-1.7
N.D.
stress
Fluorophosphate 0.125 M
-3.2
+0.6
+0.1
-0.5
N.D.
stress
molybdate 0.25 M
-2.4
+1.7
+0.2
-2.6
N.D.
stress
Gjerstad humics 0.5 M
-2.1
-1.4
-0.2
+0.6
N.D.
stress
Magnesium chloride 0.125 M
-0.3
+0.7
-0.9
-2.5
N.D.
stress
selenate 0.5 M
-3.6
+0.6
+0.3
-0.1
N.D.
nitrogen source
L-Serine (N)
-1.4
+1.0
-1.9
-0.2
N.D.
stress
dimethyl sulfone 0.25 M
-2.3
+0.9
+0.3
-1.0
N.D.
stress
thiosulfate 0.25 M
-2.8
+1.4
+0.6
-1.1
N.D.
stress
thiosulfate 0.25 M
-2.2
+1.2
+0.8
-1.1
N.D.
stress
DEANONOate 0.000625 M
+1.2
-2.8
-0.5
+0.9
N.D.
stress
Aluminum chloride 4 mM
-3.8
+0.5
+1.3
+0.8
N.D.
carbon source
D-Galactose (C)
+0.5
+5.1
-1.2
-4.9
N.D.
carbon source
Glycerol (C)
-1.0
+2.1
-0.5
-0.7
N.D.
carbon source
D-Fructose (C)
-1.1
+2.3
-0.3
-0.9
N.D.
carbon source
D-Galactose (C)
-0.9
+4.8
-0.8
-2.8
N.D.
stress
Vancomycin 0.24 mg/ml
+0.0
+3.3
+0.1
+1.3
N.D.
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