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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_3062 and Pf6N2E2_3063 are separated by 67 nucleotides
Pf6N2E2_3063 and Pf6N2E2_3064 overlap by 4 nucleotides
Pf6N2E2_3064 and Pf6N2E2_3065 overlap by 1 nucleotides
Pf6N2E2_3065 and Pf6N2E2_3066 are separated by 13 nucleotides
Pf6N2E2_3062 - Membrane-associated zinc metalloprotease, at 3,548,757 to 3,550,094
_3062
Pf6N2E2_3063 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 3,550,162 to 3,551,352
_3063
Pf6N2E2_3064 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,551,349 to 3,552,155
_3064
Pf6N2E2_3065 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,552,155 to 3,552,910
_3065
Pf6N2E2_3066 - Ribosome recycling factor, at 3,552,924 to 3,553,481
_3066
Group
Condition
Pf6N2E2
_3062
Pf6N2E2
_3063
Pf6N2E2
_3064
Pf6N2E2
_3065
Pf6N2E2
_3066
stress
Phosphomycin 0.004 mg/ml
-5.4
N.D.
N.D.
N.D.
N.D.
stress
DEANONOate 0.000625 M
-5.1
N.D.
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-4.4
N.D.
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
-4.1
N.D.
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-4.1
N.D.
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-3.9
N.D.
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-3.9
N.D.
N.D.
N.D.
N.D.
carbon source
L-Isoleucine (C)
-3.8
N.D.
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
-3.7
N.D.
N.D.
N.D.
N.D.
stress
Chloride 600 mM
-3.7
N.D.
N.D.
N.D.
N.D.
carbon source
m-Inositol (C)
-3.7
N.D.
N.D.
N.D.
N.D.
carbon source
D-Alanine (C)
-3.7
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-3.6
N.D.
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-3.5
N.D.
N.D.
N.D.
N.D.
carbon source
Glycerol (C)
-3.5
N.D.
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-3.5
N.D.
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
-3.4
N.D.
N.D.
N.D.
N.D.
stress
Fusidic 0.4 mg/ml
-3.3
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
-3.3
N.D.
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
-3.3
N.D.
N.D.
N.D.
N.D.
stress
Magnesium chloride 0.125 M
-3.1
N.D.
N.D.
N.D.
N.D.
carbon source
Putrescine (C)
-3.1
N.D.
N.D.
N.D.
N.D.
stress
DEANONOate 0.000625 M
-3.0
N.D.
N.D.
N.D.
N.D.
carbon source
Putrescine (C)
-3.0
N.D.
N.D.
N.D.
N.D.
carbon source
D-Fructose (C)
-2.9
N.D.
N.D.
N.D.
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-2.9
N.D.
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
+3.0
N.D.
N.D.
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
+3.2
N.D.
N.D.
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
+3.6
N.D.
N.D.
N.D.
N.D.
motility
inner cut, LB soft agar motility assay
+4.4
N.D.
N.D.
N.D.
N.D.
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