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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_3028 and Pf6N2E2_3029 are separated by 36 nucleotides
Pf6N2E2_3029 and Pf6N2E2_3030 are separated by 119 nucleotides
Pf6N2E2_3030 and Pf6N2E2_3031 are separated by 544 nucleotides
Pf6N2E2_3031 and Pf6N2E2_3032 are separated by 614 nucleotides
Pf6N2E2_3028 - FIG00959937: hypothetical protein, at 3,513,195 to 3,513,707
_3028
Pf6N2E2_3029 - Holin, at 3,513,744 to 3,514,094
_3029
Pf6N2E2_3030 - hypothetical protein, at 3,514,214 to 3,514,642
_3030
Pf6N2E2_3031 - Transcriptional regulator, Cro/CI family, at 3,515,187 to 3,515,930
_3031
Pf6N2E2_3032 - hypothetical protein, at 3,516,545 to 3,516,898
_3032
Group
Condition
Pf6N2E2
_3028
Pf6N2E2
_3029
Pf6N2E2
_3030
Pf6N2E2
_3031
Pf6N2E2
_3032
motility
inner cut, LB soft agar motility assay
-0.3
-0.7
-0.2
N.D.
-0.1
stress
Nickel (II) chloride 0.0025 M
-0.4
-0.5
-0.2
N.D.
-0.2
stress
DEANONOate 0.000625 M
-1.2
-0.4
+0.4
N.D.
+0.2
carbon source
Ying_Nucleobase14 rep B; time point 2
-0.6
-0.4
+0.5
N.D.
-0.3
stress
Nickel (II) chloride 1.5 mM
-0.5
-0.4
-0.1
N.D.
+0.4
stress
4-Hydroxyacetophenone 0.00025 M
-0.5
+0.5
-0.1
N.D.
-0.2
carbon source
L-Leucine (C)
-0.5
+0.4
-0.4
N.D.
+0.2
carbon source
Ying_Others16 rep B; time point 3
+0.5
-0.4
+0.0
N.D.
-0.4
nitrogen source
L-Glutamic (N)
-0.6
+0.0
-0.1
N.D.
+0.5
motility
inner cut, LB soft agar motility assay
+0.2
-0.9
+0.1
N.D.
+0.6
carbon source
Ying_sugar7 rep B; time point 2
-0.6
+0.6
+0.1
N.D.
+0.2
stress
Nalidixic 0.004 mg/ml
-0.1
+0.4
+0.4
N.D.
-0.3
stress
Cobalt chloride 0.6 mM
-0.8
+0.1
+0.4
N.D.
+0.6
stress
periodate 0.00125 M
-0.4
+0.6
+0.2
N.D.
+0.1
nitrogen source
L-Serine (N)
-0.4
+1.0
+0.3
N.D.
-0.4
stress
Fusidic 0.3 mg/ml
-0.4
+0.3
+0.4
N.D.
+0.2
nitrogen source
nitrate (N)
+0.0
+0.6
-0.3
N.D.
+0.4
stress
dimethyl sulfone 0.25 M
+0.6
+0.5
-0.1
N.D.
-0.3
stress
chromate 0.0000015625 M
-0.1
+0.7
+0.3
N.D.
+0.0
carbon source
D-Xylose (C)
+0.1
+0.7
+0.3
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
+0.1
+0.7
+0.3
N.D.
+0.2
stress
Zinc chloride 0.0000015625 M
-0.1
+0.5
+0.6
N.D.
+0.4
stress
deoxycholate 0.0125 M
-0.3
+0.8
+0.5
N.D.
+0.5
stress
Bile salts 0.0125 M
+0.1
+0.7
+0.3
N.D.
+0.5
carbon source
D-Fructose (C)
-0.1
+1.4
+0.8
N.D.
-0.3
carbon source
D-Galactose (C)
+0.0
+1.4
+1.0
N.D.
-0.2
nitrogen source
L-Serine (N)
+0.0
+0.9
+0.6
N.D.
+0.9
carbon source
D-Galactose (C)
-0.3
+1.3
+1.4
N.D.
+0.3
stress
Lomefloxacin 0.0002 mM
+0.3
+1.6
+1.2
N.D.
+0.1
stress
Cisplatin 0.008 mg/ml
+0.6
+1.8
+1.1
N.D.
-0.1
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Pf6N2E2_3030
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