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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_3021 and Pf6N2E2_3022 are separated by 90 nucleotides
Pf6N2E2_3022 and Pf6N2E2_3023 are separated by 410 nucleotides
Pf6N2E2_3023 and Pf6N2E2_3024 are separated by 0 nucleotides
Pf6N2E2_3024 and Pf6N2E2_3025 overlap by 4 nucleotides
Pf6N2E2_3021 - hypothetical protein, at 3,507,424 to 3,507,633
_3021
Pf6N2E2_3022 - hypothetical protein, at 3,507,724 to 3,508,122
_3022
Pf6N2E2_3023 - Prophage long tail fiber protein, at 3,508,533 to 3,510,611
_3023
Pf6N2E2_3024 - Phage tail fibers, at 3,510,612 to 3,511,247
_3024
Pf6N2E2_3025 - Baseplate assembly protein J, at 3,511,244 to 3,512,239
_3025
Group
Condition
Pf6N2E2
_3021
Pf6N2E2
_3022
Pf6N2E2
_3023
Pf6N2E2
_3024
Pf6N2E2
_3025
carbon source
L-Leucine (C)
-3.0
N.D.
+0.0
-0.8
+0.1
nitrogen source
nitrogen source nitrite 0.5mM
-1.8
N.D.
+0.0
-1.7
-0.2
nitrogen source
nitrogen source nitrate 5mM
-3.1
N.D.
+0.1
-0.2
+0.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
-3.4
N.D.
+0.1
+0.4
-0.2
stress
Bile salts 0.0125 M
-4.0
N.D.
-0.4
+1.5
-0.1
stress
copper (II) chloride 3 mM
-0.7
N.D.
+0.1
-2.0
-0.1
nitrogen source
L-Aspartic Acid (N)
-0.6
N.D.
+0.1
-2.0
-0.0
stress
Cobalt chloride 0.6 mM
-1.7
N.D.
+0.1
-0.8
+0.2
stress
deoxycholate 0.0125 M
-4.0
N.D.
+0.3
+1.0
+0.6
stress
RCH2 defined with Cobalt chloride 0.04 mM
-1.5
N.D.
+0.0
-0.6
+0.0
nitrogen source
nitrogen source nitrite 5mM
-1.5
N.D.
+0.1
-0.1
-0.1
stress
Cobalt chloride 0.4 mM
-1.1
N.D.
+0.1
-0.9
+0.2
nitrogen source
nitrate (N)
-0.9
N.D.
+0.0
-0.8
+0.2
carbon source
D-Trehalose (C)
-1.4
N.D.
-0.0
-0.2
+0.1
motility
inner cut, LB soft agar motility assay
+0.2
N.D.
-0.0
-1.5
+0.2
stress
Nickel (II) chloride 1.5 mM
-0.1
N.D.
+0.1
-1.3
+0.4
stress
DEANONOate 0.000625 M
+0.5
N.D.
-0.2
-1.2
+0.2
stress
Magnesium chloride 0.125 M
+0.6
N.D.
-0.0
-1.0
-0.2
stress
tungstate 0.05 M
-1.3
N.D.
+0.1
+0.6
+0.1
nitrogen source
Cytidine (N)
-1.2
N.D.
-0.1
+0.7
+0.2
vitamin
No vitamins t1
-0.7
N.D.
+0.1
+0.7
+0.3
stress
Zinc chloride 0.0000015625 M
+0.9
N.D.
+0.5
-1.1
+0.2
stress
sodium iodate 0.005 M
+1.3
N.D.
-0.1
-0.7
+0.0
lb
LB no stress 24 hours
+1.2
N.D.
+0.1
-0.8
+0.1
stress
Magnesium chloride 0.125 M
+1.2
N.D.
+0.1
-0.7
+0.1
nitrogen source
Urea (N)
-0.1
N.D.
+0.3
+1.5
+0.0
stress
bromate 0.05 M
+0.9
N.D.
+0.2
+0.7
+0.1
stress
Cisplatin 0.008 mg/ml
+0.3
N.D.
+0.3
+0.8
+0.6
stress
dimethyl sulfone 0.25 M
+0.9
N.D.
+0.1
+0.9
+0.4
stress
Nickel (II) chloride 0.0025 M
+1.9
N.D.
+0.2
+0.8
+0.1
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