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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_300 and Pf6N2E2_301 are separated by 12 nucleotides
Pf6N2E2_301 and Pf6N2E2_302 are separated by 0 nucleotides
Pf6N2E2_302 and Pf6N2E2_303 are separated by 127 nucleotides
Pf6N2E2_303 and Pf6N2E2_304 are separated by 88 nucleotides
Pf6N2E2_300 - CrcB protein, at 370,724 to 371,101
_300
Pf6N2E2_301 - Seryl-tRNA synthetase (EC 6.1.1.11), at 371,114 to 372,394
_301
Pf6N2E2_302 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 372,395 to 373,789
_302
Pf6N2E2_303 - Glutathione S-transferase, omega (EC 2.5.1.18), at 373,917 to 374,915
_303
Pf6N2E2_304 - Anthranilate phosphoribosyltransferase like (EC 2.4.2.18), at 375,004 to 376,005
_304
Group
Condition
Pf6N2E2
_300
Pf6N2E2
_301
Pf6N2E2
_302
Pf6N2E2
_303
Pf6N2E2
_304
stress
Fluorophosphate 0.125 M
-5.4
N.D.
-1.0
+0.0
-0.5
stress
Gjerstad humics 0.5 M
-5.6
N.D.
-0.6
+0.1
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
N.D.
-5.3
-0.1
-0.2
stress
sodium fluoride 15 mM
-5.4
N.D.
-0.3
-0.0
+0.1
nitrogen source
L-Glutamine (N)
-0.0
N.D.
-4.8
-0.0
-0.8
nitrogen source
L-Arginine (N)
+0.0
N.D.
-5.1
-0.1
-0.5
stress
Fluorophosphate 0.125 M
-5.5
N.D.
-0.0
+0.2
-0.2
stress
Hydrochloric Acid 0.005 M
-4.3
N.D.
-0.6
-0.0
-0.5
carbon source
propionate (C)
-0.1
N.D.
-5.3
-0.0
+0.3
carbon source
Carbon source Sucrose 2.5 mM
-1.4
N.D.
-3.4
-0.0
-0.4
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.1
N.D.
-5.1
-0.0
+0.0
stress
chromate 0.0000015625 M
+0.0
N.D.
-4.4
-0.0
-0.7
nitrogen source
Glucuronamide (N)
-0.1
N.D.
-4.0
-0.2
-0.7
nitrogen source
L-Lysine (N)
-0.5
N.D.
-3.9
+0.0
-0.6
nitrogen source
L-Phenylalanine (N)
-0.2
N.D.
-4.4
-0.1
+0.0
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.9
N.D.
-4.0
+0.1
+0.0
carbon source
L-Asparagine (C)
-0.0
N.D.
-4.6
-0.1
+0.1
stress
sodium fluoride 12.5 mM
-3.8
N.D.
-0.9
+0.1
-0.0
carbon source
Carnitine Hydrochloride (C)
+0.2
N.D.
-4.9
+0.1
+0.1
carbon source
D-Glucose (C)
+0.2
N.D.
-4.5
+0.0
-0.1
nitrogen source
L-Asparagine (N)
-0.1
N.D.
-4.5
+0.0
+0.3
carbon source
octanoate (C)
-0.6
N.D.
-4.3
+0.1
+0.7
nitrogen source
L-Histidine (N)
+0.1
N.D.
-4.6
+0.1
+0.4
nitrogen source
L-Asparagine (N)
-0.2
N.D.
-4.2
+0.1
+0.5
stress
Gjerstad humics 0.5 M
-4.2
N.D.
-0.0
+0.3
+0.3
carbon source
a-Ketoglutaric (C)
-0.1
N.D.
-4.1
+0.2
+0.4
nitrogen source
L-Glutamine (N)
+0.4
N.D.
-4.3
-0.1
+0.4
carbon source
D-Sorbitol (C)
+0.6
N.D.
-4.6
+0.1
+0.5
nitrogen source
Ammonium chloride (N)
+0.0
N.D.
-3.9
+0.1
+0.8
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.7
N.D.
-3.5
-0.1
+0.9
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