Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3001 and Pf6N2E2_3002 overlap by 13 nucleotidesPf6N2E2_3002 and Pf6N2E2_3003 overlap by 11 nucleotidesPf6N2E2_3003 and Pf6N2E2_3004 overlap by 4 nucleotidesPf6N2E2_3004 and Pf6N2E2_3005 are separated by 130 nucleotides Pf6N2E2_3001 - FIG121501: Prophage tail protein, at 3,491,389 to 3,491,988 _3001 Pf6N2E2_3002 - Phage FluMu protein gp47, at 3,491,976 to 3,493,016 _3002 Pf6N2E2_3003 - Bacteriophage protein GP46, at 3,493,006 to 3,493,407 _3003 Pf6N2E2_3004 - Prophage baseplate assembly protein V, at 3,493,404 to 3,493,913 _3004 Pf6N2E2_3005 - FIG003269: Prophage tail protein, at 3,494,044 to 3,495,084 _3005
Group Condition Pf6N2E2_3001 Pf6N2E2_3002 Pf6N2E2_3003 Pf6N2E2_3004 Pf6N2E2_3005
nitrogen source nitrogen source nitrate 5mM -0.0 -0.0 -0.6 -4.5 +0.2
stress deoxycholate 0.0125 M +0.1 -0.4 -4.2 +0.6 +0.0
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.2 +0.1 -1.6 -1.3 +0.1
stress Cobalt chloride 0.6 mM +0.0 +0.1 -2.8 -0.2 +0.1
carbon source Ying_AminoAcid20 rep B; time point 3 -0.1 +0.2 -1.6 -0.9 -0.0
carbon source Ying_AminoAcid20 rep C; time point 3 +0.0 +0.0 -1.0 -1.6 +0.0
stress RCH2 defined with Cobalt chloride 0.02 mM -0.1 -0.2 -0.9 -1.3 -0.0
lb LB no stress 48 hours +0.2 -0.0 -1.1 -1.2 -0.0
stress Nickel (II) chloride 1.5 mM -0.1 -0.2 -1.1 -0.6 -0.0
stress RCH2 defined with Cobalt chloride 0.04 mM +0.1 +0.1 -0.5 -1.5 -0.1
stress RCH2 defined with copper (II) chloride 0.03 mM +0.3 +0.0 -2.8 +0.5 +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 -0.2 -0.1 -1.5 +0.0 +0.1
carbon source RCH2_defined -0.0 +0.3 -1.6 -0.4 +0.1
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.1 +0.0 -1.6 -0.3 +0.2
carbon source Ying_OrganicAcid7 rep A; time point 2 -0.1 +0.1 -1.0 -0.7 +0.0
stress dimethyl sulfone 0.25 M -0.1 +0.4 -1.2 -0.8 +0.2
stress Cobalt chloride 0.4 mM +0.3 -0.0 +0.2 -1.5 +0.0
carbon source Ying_sugar7 rep C; time point 2 +0.1 +0.3 -1.5 +0.4 -0.0
nitrogen source nitrogen source nitrite 1mM +0.0 -0.2 -1.1 +0.6 +0.0
carbon source D-Glucosamine Hydrochloride (C) +0.1 +0.3 -1.0 +0.3 -0.2
carbon source octanoate (C) +0.2 +0.5 -1.0 -0.3 +0.1
carbon source Ying_Others16 rep C; time point 3 -0.2 +0.3 +0.4 -1.0 +0.1
carbon source Ying_Nucleobase14 rep C; time point 2 +0.1 +0.2 -1.1 +0.4 -0.1
carbon source L-Leucine (C) +0.3 +0.4 +0.3 -1.4 -0.0
carbon source Ying_AminoAcid20 rep A; time point 3 -0.4 +0.3 +0.6 -0.8 +0.1
nitrogen source L-Serine (N) -0.5 -0.1 +1.1 -0.4 +0.3
nitrogen source nitrogen source nitrite 0.5mM +0.1 -0.0 -0.6 +1.2 -0.1
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.1 -0.5 +1.3 +0.1
stress Bile salts 0.0125 M +0.0 -0.2 -0.4 +1.3 -0.1
nitrogen source nitrogen source nitrate 20mM +0.3 +0.2 +1.3 +1.2 +0.0
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Pf6N2E2_3001
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