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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_2989 and Pf6N2E2_2990 are separated by 127 nucleotides
Pf6N2E2_2990 and Pf6N2E2_2991 are separated by 255 nucleotides
Pf6N2E2_2991 and Pf6N2E2_2992 are separated by 46 nucleotides
Pf6N2E2_2992 and Pf6N2E2_2993 are separated by 53 nucleotides
Pf6N2E2_2989 - hypothetical protein, at 3,482,672 to 3,482,824
_2989
Pf6N2E2_2990 - hypothetical protein, at 3,482,952 to 3,483,077
_2990
Pf6N2E2_2991 - decarboxylase, at 3,483,333 to 3,484,451
_2991
Pf6N2E2_2992 - Regulatory protein RecX, at 3,484,498 to 3,484,920
_2992
Pf6N2E2_2993 - RecA protein, at 3,484,974 to 3,486,026
_2993
Group
Condition
Pf6N2E2
_2989
Pf6N2E2
_2990
Pf6N2E2
_2991
Pf6N2E2
_2992
Pf6N2E2
_2993
stress
Cisplatin 0.008 mg/ml
N.D.
-0.2
-0.0
-5.5
N.D.
stress
Lomefloxacin 0.0002 mM
N.D.
-0.1
+0.1
-3.1
N.D.
stress
Bile salts 0.0125 M
N.D.
-0.9
+0.1
-1.4
N.D.
motility
inner cut, LB soft agar motility assay
N.D.
-0.4
+0.0
-1.6
N.D.
stress
Nalidixic 0.008 mg/ml
N.D.
-0.2
+0.0
-1.8
N.D.
stress
Nalidixic 0.004 mg/ml
N.D.
-0.1
+0.1
-1.9
N.D.
motility
outer cut, LB soft agar motility assay
N.D.
-0.2
+0.0
-1.7
N.D.
stress
deoxycholate 0.0125 M
N.D.
+0.3
-0.1
-1.8
N.D.
stress
Chloride 600 mM
N.D.
-0.1
-0.0
-1.5
N.D.
stress
thiosulfate 0.25 M
N.D.
-0.2
+0.0
-1.4
N.D.
lb
LB
N.D.
-0.1
-0.3
-1.1
N.D.
stress
phosphite 0.25 M
N.D.
-0.4
-0.2
-0.8
N.D.
carbon source
L-Leucine (C)
N.D.
-0.0
-0.1
-1.3
N.D.
stress
Calcium chloride 0.0125 M
N.D.
+0.2
-0.0
-1.5
N.D.
stress
RCH2 defined with Cobalt chloride 0.02 mM
N.D.
+0.3
-0.2
-1.5
N.D.
stress
Chloride 500 mM
N.D.
+0.0
-0.2
-1.2
N.D.
carbon source
Ying_Others16 rep C; time point 1
N.D.
-0.3
+0.1
-1.1
N.D.
stress
periodate 0.00125 M
N.D.
-0.3
+0.1
-1.0
N.D.
stress
chromate 0.0000015625 M
N.D.
+0.1
-0.3
-1.1
N.D.
motility
inner cut, LB soft agar motility assay
N.D.
-0.0
+0.0
-1.3
N.D.
stress
pyrophosphate 0.0025 M
N.D.
+0.1
-0.1
-1.2
N.D.
stress
DEANONOate 0.000625 M
N.D.
+0.0
+0.1
-1.3
N.D.
stress
D-Cycloserine 0.12 mg/ml
N.D.
+0.1
+0.0
-1.3
N.D.
stress
bromate 0.05 M
N.D.
-0.7
+0.2
-0.5
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
-0.3
+0.2
-0.8
N.D.
stress
Vancomycin 0.24 mg/ml
N.D.
+0.5
+0.1
-1.4
N.D.
carbon source
D-Xylose (C)
N.D.
-0.3
+0.2
-0.8
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
+0.3
-0.3
-0.8
N.D.
nitrogen source
L-Aspartic Acid (N)
N.D.
+0.1
+0.2
-1.1
N.D.
carbon source
RCH2_defined
N.D.
+0.4
+0.1
-0.9
N.D.
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