Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_2950 and Pf6N2E2_2951 are separated by 5 nucleotidesPf6N2E2_2951 and Pf6N2E2_2952 are separated by 290 nucleotidesPf6N2E2_2952 and Pf6N2E2_2953 overlap by 2 nucleotidesPf6N2E2_2953 and Pf6N2E2_2954 are separated by 84 nucleotides Pf6N2E2_2950 - Conserved secreted protein, at 3,441,008 to 3,441,475 _2950 Pf6N2E2_2951 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 3,441,481 to 3,441,684 _2951 Pf6N2E2_2952 - Isochorismatase (EC 3.3.2.1), at 3,441,975 to 3,442,532 _2952 Pf6N2E2_2953 - hypothetical protein, at 3,442,531 to 3,442,653 _2953 Pf6N2E2_2954 - Penicillin acylase (EC 3.5.1.11), at 3,442,738 to 3,445,188 _2954
Group Condition Pf6N2E2_2950 Pf6N2E2_2951 Pf6N2E2_2952 Pf6N2E2_2953 Pf6N2E2_2954
carbon source RCH2_defined -0.4 N.D. -0.6 N.D. -0.2
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.3 N.D. -0.5 N.D. -0.1
carbon source Ying_AminoAcid20 rep A; time point 2 -0.2 N.D. -0.6 N.D. -0.1
stress periodate 0.00125 M -0.5 N.D. -0.4 N.D. +0.0
carbon source Ying_Others16 rep C; time point 2 -0.5 N.D. -0.1 N.D. -0.2
stress bromate 0.05 M +0.1 N.D. -0.6 N.D. -0.2
stress RCH2 defined with Cobalt chloride 0.04 mM +0.3 N.D. -1.0 N.D. -0.0
nitrogen source nitrogen source nitrite 5mM -0.3 N.D. -0.5 N.D. +0.2
stress RCH2 defined with Cobalt chloride 0.02 mM +0.2 N.D. -0.5 N.D. -0.2
nitrogen source nitrogen source nitrite 5mM -0.5 N.D. -0.2 N.D. +0.2
nitrogen source Urea (N) +0.2 N.D. -0.6 N.D. +0.0
vitamin No vitamins t2 -0.6 N.D. +0.2 N.D. +0.0
motility inner cut, LB soft agar motility assay -0.4 N.D. +0.4 N.D. -0.1
carbon source Ying_sugar7 rep C; time point 1 -0.3 N.D. +0.4 N.D. -0.3
stress Rifampicin 0.003 mg/ml -0.1 N.D. +0.4 N.D. -0.3
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C +0.3 N.D. -0.4 N.D. +0.0
stress Zinc chloride 0.0000015625 M -0.3 N.D. +0.7 N.D. -0.4
nitrogen source Uridine (N) +0.4 N.D. -0.3 N.D. -0.0
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.1 N.D. +0.5 N.D. -0.3
stress Chlorite 0.00005 M -0.2 N.D. +0.5 N.D. -0.2
nitrogen source nitrogen source Ammonium chloride 20mM -0.4 N.D. +0.4 N.D. +0.2
stress RCH2 defined with Cobalt chloride 0.04 mM +0.5 N.D. -0.2 N.D. -0.1
stress phosphite 0.25 M -0.3 N.D. +0.4 N.D. +0.1
stress Nickel (II) chloride 1 mM -0.2 N.D. +0.5 N.D. +0.2
stress chromate 0.000005 M -0.0 N.D. +0.6 N.D. +0.2
carbon source Ying_sugar7 rep B; time point 2 -0.1 N.D. +0.9 N.D. -0.0
nitrogen source L-Serine (N) +1.2 N.D. -0.4 N.D. +0.1
stress bromate 0.05 M +0.1 N.D. +0.6 N.D. +0.1
nitrogen source L-Serine (N) +0.2 N.D. +0.4 N.D. +0.3
motility inner cut, LB soft agar motility assay +0.6 N.D. +0.5 N.D. +0.2
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