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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_2893 and Pf6N2E2_2894 are separated by 29 nucleotides
Pf6N2E2_2894 and Pf6N2E2_2895 are separated by 240 nucleotides
Pf6N2E2_2895 and Pf6N2E2_2896 overlap by 11 nucleotides
Pf6N2E2_2896 and Pf6N2E2_2897 are separated by 184 nucleotides
Pf6N2E2_2893 - hypothetical protein, at 3,381,822 to 3,382,025
_2893
Pf6N2E2_2894 - N-acylglucosamine 2-epimerase (EC 5.1.3.8), at 3,382,055 to 3,383,314
_2894
Pf6N2E2_2895 - Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster, at 3,383,555 to 3,385,024
_2895
Pf6N2E2_2896 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 3,385,014 to 3,385,745
_2896
Pf6N2E2_2897 - Glucokinase (EC 2.7.1.2), at 3,385,930 to 3,386,889
_2897
Group
Condition
Pf6N2E2
_2893
Pf6N2E2
_2894
Pf6N2E2
_2895
Pf6N2E2
_2896
Pf6N2E2
_2897
vitamin
With vitamins t2
-4.2
-0.6
-3.4
-3.7
-3.8
vitamin
No vitamins t2
-3.0
-0.6
-2.7
-3.3
-3.6
nitrogen source
Ammonium chloride (N)
-3.6
-0.2
-2.7
-2.4
-4.3
nitrogen source
Glycine (N)
-2.4
-0.2
-2.6
-3.2
-3.7
carbon source
Carbon source D-Glucose 10 mM
-2.4
-0.6
-3.8
-3.1
-2.1
nitrogen source
Ammonium chloride (N)
-2.5
-0.3
-2.2
-2.4
-4.0
nitrogen source
L-Arginine (N)
-1.8
+0.3
-2.2
-2.8
-4.8
nitrogen source
Glycine (N)
-1.6
-0.4
-2.5
-2.4
-4.3
nitrogen source
nitrogen source Ammonium chloride 20mM
-2.4
-0.3
-2.6
-2.8
-2.9
nitrogen source
Cytosine (N)
-2.2
-0.0
-2.9
-1.6
-4.1
nitrogen source
L-Arginine (N)
-2.6
-0.2
-1.7
-1.2
-5.1
carbon source
Carbon source D-Glucose 10 mM
-2.5
-0.4
-2.7
-2.7
-2.3
nitrogen source
Cytosine (N)
-2.0
+0.3
-2.6
-2.7
-2.9
vitamin
With vitamins t1
-1.8
-0.9
-1.6
-2.5
-2.7
nitrogen source
nitrate (N)
-1.8
-0.1
-2.2
-2.1
-3.4
nitrogen source
L-Citrulline (N)
-1.7
-0.5
-2.2
-2.1
-2.7
nitrogen source
nitrate (N)
-1.6
-0.2
-1.9
-1.7
-3.7
nitrogen source
Gly-Glu (N)
-1.0
+0.1
-1.4
-2.6
-4.2
nitrogen source
L-Proline (N)
-1.0
-0.4
-1.6
-2.0
-3.5
nitrogen source
Urea (N)
-1.2
-0.1
-1.2
-1.5
-4.5
nitrogen source
Cytidine (N)
-1.3
+0.1
-1.4
-3.2
-2.6
carbon source
D-Mannose (C)
-0.9
-4.4
-1.4
-1.0
+0.1
nitrogen source
Cytidine (N)
-1.1
-0.3
-1.3
-1.8
-2.8
vitamin
No vitamins t1
-1.1
-0.6
-1.5
-1.6
-2.3
carbon source
D-Mannose (C)
-0.9
-2.3
-1.8
-1.4
-0.2
nitrogen source
L-Phenylalanine (N)
-0.4
+0.1
-0.7
-0.7
-4.6
nitrogen source
nitrogen source Ammonium chloride 20mM
-1.0
-0.2
-1.6
-1.2
-2.1
nitrogen source
L-Lysine (N)
-0.4
-0.0
-0.7
-0.6
-4.3
nitrogen source
L-Histidine (N)
-1.0
+0.1
-0.8
-0.5
-3.5
nitrogen source
L-Isoleucine (N)
-1.1
+0.6
-1.3
-1.9
-1.3
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