Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_2879 and Pf6N2E2_2880 are separated by 285 nucleotidesPf6N2E2_2880 and Pf6N2E2_2881 are separated by 149 nucleotidesPf6N2E2_2881 and Pf6N2E2_2882 are separated by 17 nucleotidesPf6N2E2_2882 and Pf6N2E2_2883 are separated by 233 nucleotides Pf6N2E2_2879 - membrane protein, putative, at 3,366,303 to 3,368,303 _2879 Pf6N2E2_2880 - FIG00959696: hypothetical protein, at 3,368,589 to 3,369,053 _2880 Pf6N2E2_2881 - Putative cytoplasmic protein, at 3,369,203 to 3,369,496 _2881 Pf6N2E2_2882 - Isopenicillin N epimerase (EC 5.1.1.17), at 3,369,514 to 3,370,701 _2882 Pf6N2E2_2883 - 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14), at 3,370,935 to 3,371,600 _2883
Group Condition Pf6N2E2_2879 Pf6N2E2_2880 Pf6N2E2_2881 Pf6N2E2_2882 Pf6N2E2_2883
carbon source octanoate (C) -3.1 +0.2 -0.1 +0.0 N.D.
motility outer cut, LB soft agar motility assay +0.1 -2.5 -0.5 +0.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -1.7 -0.7 +0.2 +0.1 N.D.
carbon source octanoate (C) -2.2 +0.2 +0.1 -0.2 N.D.
carbon source D-Trehalose (C) -0.5 +0.0 -0.5 -0.5 N.D.
stress antimonate 0.005 M +0.1 -2.0 +0.3 +0.2 N.D.
carbon source Ying_Nucleobase14 rep B; time point 1 +0.3 -0.5 -0.6 -0.5 N.D.
carbon source RCH2_defined -0.1 -1.3 +0.2 -0.0 N.D.
carbon source Ying_AminoAcid20 rep B; time point 3 -0.1 -1.4 +0.3 +0.0 N.D.
stress Bile salts 0.0125 M +0.1 -0.7 -0.8 +0.1 N.D.
lb LB no stress 24 hours +0.2 -0.9 -0.4 +0.0 N.D.
carbon source Ying_Others16 rep C; time point 3 -0.3 -0.8 +0.3 -0.3 N.D.
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.2 -1.1 +0.3 +0.0 N.D.
stress nitrate 0.125 M -0.0 -1.7 +0.5 +0.3 N.D.
stress Nickel (II) chloride 0.0025 M -0.0 -1.1 -0.3 +0.4 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -1.6 +0.3 +0.3 +0.2 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.2 -0.8 +0.6 -0.1 N.D.
stress Vanillyl Alcohol 0.005 M +0.2 +0.5 -0.8 -0.2 N.D.
motility inner cut, LB soft agar motility assay -0.1 -0.9 +0.4 +0.3 N.D.
motility inner cut, LB soft agar motility assay +0.3 -1.6 +0.8 +0.3 N.D.
carbon source Ying_AminoAcid20 rep C; time point 2 +0.0 +0.9 -0.4 -0.5 N.D.
nitrogen source nitrogen source nitrite 0.5mM +0.2 +0.6 -0.3 -0.5 N.D.
stress bromate 0.05 M -0.6 -0.3 +0.6 +0.4 N.D.
stress Zinc chloride 0.0000015625 M -0.1 -0.6 +0.5 +0.5 N.D.
stress Nickel (II) chloride 1 mM +0.3 +0.5 -0.6 +0.2 N.D.
carbon source Ying_Nucleobase14 rep B; time point 3 +0.2 -0.4 +1.0 -0.3 N.D.
motility outer cut, LB soft agar motility assay +0.1 +1.2 -0.2 +0.3 N.D.
nitrogen source Glucuronamide (N) +0.2 +0.3 +1.0 +0.1 N.D.
stress thiosulfate 0.25 M +0.8 +0.5 +0.1 +0.3 N.D.
carbon source Ying_sugar7 rep B; time point 2 +0.0 +1.7 +0.4 +0.1 N.D.
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