Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_6113 and Pf6N2E2_2787 are separated by 835 nucleotidesPf6N2E2_2787 and Pf6N2E2_2788 are separated by 977 nucleotidesPf6N2E2_2788 and Pf6N2E2_2789 are separated by 145 nucleotidesPf6N2E2_2789 and Pf6N2E2_2790 are separated by 221 nucleotides Pf6N2E2_6113 - tRNA-Gly-CCC, at 3,276,479 to 3,276,549 _6113 Pf6N2E2_2787 - hypothetical protein, at 3,277,385 to 3,277,498 _2787 Pf6N2E2_2788 - Transcriptional regulator, AsnC family, at 3,278,476 to 3,278,958 _2788 Pf6N2E2_2789 - L-lysine permease, at 3,279,104 to 3,279,733 _2789 Pf6N2E2_2790 - Helix-turn-helix motif, at 3,279,955 to 3,280,317 _2790
Group Condition Pf6N2E2_6113 Pf6N2E2_2787 Pf6N2E2_2788 Pf6N2E2_2789 Pf6N2E2_2790
nitrogen source nitrogen source nitrite 5mM +0.3 N.D. -3.3 -0.2 -0.6
motility inner cut, LB soft agar motility assay +0.6 N.D. -0.1 -0.3 -2.6
motility inner cut, LB soft agar motility assay -0.2 N.D. -1.3 +0.3 -0.7
stress Chlorite 0.00005 M +0.3 N.D. -1.4 -0.2 -0.4
carbon source Ying_OrganicAcid7 rep B; time point 2 -0.1 N.D. -1.3 +0.2 -0.4
nitrogen source L-Serine (N) -0.1 N.D. -0.2 +0.3 -1.5
stress thiosulfate 0.25 M -0.5 N.D. -1.0 -0.5 +0.6
stress antimonate 0.005 M +0.6 N.D. -1.1 -0.1 -0.6
stress selenate 0.5 M +0.0 N.D. -1.7 -0.0 +0.8
stress Nickel (II) chloride 0.5 mM -0.5 N.D. +0.6 -0.3 -0.6
stress periodate 0.00125 M -1.0 N.D. -0.9 -0.1 +1.1
carbon source Ying_Others16 rep A; time point 1 +0.1 N.D. -1.1 +0.5 -0.3
stress RCH2 defined with Zinc 0.032 mM +0.1 N.D. -1.1 -0.2 +0.5
stress DEANONOate 0.000625 M -0.6 N.D. +0.8 -0.3 -0.5
lb LB no stress 24 hours +0.1 N.D. -0.8 -0.5 +0.7
motility outer cut, LB soft agar motility assay +0.2 N.D. -0.5 -0.9 +1.1
carbon source L-Leucine (C) +0.2 N.D. +0.8 -0.1 -0.8
nitrogen source nitrogen source nitrate 20mM +0.6 N.D. +0.9 -0.3 -0.9
stress antimonate 0.005 M +0.4 N.D. +0.8 -0.0 -0.9
resistance 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine -0.0 N.D. -0.8 -0.2 +1.4
stress Bile salts 0.0125 M -0.4 N.D. +1.2 -0.2 +0.5
stress deoxycholate 0.0125 M -0.7 N.D. +1.0 -0.2 +1.0
nitrogen source L-Isoleucine (N) +0.6 N.D. +0.6 +0.5 -0.3
carbon source Ying_AminoAcid20 rep A; time point 3 -0.1 N.D. +1.5 +0.3 -0.1
carbon source Ying_Others16 rep B; time point 3 -0.2 N.D. +1.4 +0.1 +0.3
carbon source D-Glucosamine Hydrochloride (C) +0.5 N.D. +1.1 +0.2 -0.1
carbon source Ying_AminoAcid20 rep B; time point 3 -0.1 N.D. +1.5 +0.5 -0.1
nitrogen source L-Serine (N) -0.5 N.D. +1.5 -0.1 +1.0
stress Choline Lysine 20 mM +0.2 N.D. +0.6 +0.2 +0.9
stress Hydroxylamine 0.5 M +0.1 N.D. +1.1 +1.1 +0.6
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