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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_2727 and Pf6N2E2_2728 are separated by 121 nucleotides
Pf6N2E2_2728 and Pf6N2E2_2729 are separated by 164 nucleotides
Pf6N2E2_2729 and Pf6N2E2_2730 are separated by 343 nucleotides
Pf6N2E2_2730 and Pf6N2E2_2731 overlap by 39 nucleotides
Pf6N2E2_2727 - Ribonuclease D (EC 3.1.26.3), at 3,218,125 to 3,219,258
_2727
Pf6N2E2_2728 - SAM-dependent methyltransferases, at 3,219,380 to 3,219,925
_2728
Pf6N2E2_2729 - membrane protein, putative, at 3,220,090 to 3,221,739
_2729
Pf6N2E2_2730 - glutamine synthetase family protein, at 3,222,083 to 3,223,465
_2730
Pf6N2E2_2731 - hypothetical protein, at 3,223,427 to 3,223,546
_2731
Group
Condition
Pf6N2E2
_2727
Pf6N2E2
_2728
Pf6N2E2
_2729
Pf6N2E2
_2730
Pf6N2E2
_2731
stress
Aluminum chloride 4 mM
-0.1
-0.0
-4.3
-0.7
N.D.
stress
Aluminum chloride 2 mM
-0.6
+0.5
-1.5
-0.7
N.D.
carbon source
D-Galactose (C)
-1.8
+0.4
-0.3
-0.3
N.D.
nitrogen source
Gly-Glu (N)
+0.0
-0.8
-0.7
-0.2
N.D.
stress
Chlorite 0.00005 M
-0.9
-0.3
-0.2
-0.2
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.5
-1.1
+0.1
+0.1
N.D.
carbon source
Ying_Nucleobase14 rep C; time point 2
-0.5
-1.2
+0.0
+0.2
N.D.
carbon source
D-Galactose (C)
-1.9
+0.6
-0.3
+0.1
N.D.
carbon source
propionate (C)
-1.3
-0.2
+0.3
-0.0
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.8
-0.2
+0.1
-0.3
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 2
-0.4
-0.7
-0.1
+0.1
N.D.
nitrogen source
nitrogen source nitrate 20mM
-1.2
+0.3
-0.0
-0.2
N.D.
nitrogen source
Glucuronamide (N)
-0.8
-0.3
-0.0
+0.3
N.D.
carbon source
L-Histidine (C)
-1.1
+0.3
+0.1
+0.0
N.D.
carbon source
propionate (C)
-1.0
+0.0
+0.2
+0.2
N.D.
nitrogen source
L-Serine (N)
-0.3
-0.8
+0.3
+0.2
N.D.
nitrogen source
L-Proline (N)
+0.2
-0.8
+0.3
-0.2
N.D.
nitrogen source
L-Proline (N)
+0.1
-0.6
+0.5
-0.3
N.D.
stress
bromate 0.05 M
+0.5
-0.4
+0.0
-0.5
N.D.
nitrogen source
Cytidine (N)
+0.0
-0.7
+0.6
-0.1
N.D.
stress
Cobalt chloride 0.6 mM
-0.3
-0.4
+0.1
+0.5
N.D.
stress
Chloride 0.5 M
+1.0
-0.2
-0.2
-0.1
N.D.
carbon source
D-Fructose (C)
-0.3
+0.7
+0.1
+0.3
N.D.
stress
copper (II) chloride 3 mM
+1.2
-0.3
-0.1
-0.0
N.D.
stress
Phosphomycin 0.004 mg/ml
+0.8
-0.3
+0.2
+0.1
N.D.
stress
tungstate 0.05 M
+1.1
+0.1
+0.0
-0.2
N.D.
stress
tungstate 0.05 M
+1.1
+0.1
-0.2
+0.1
N.D.
stress
molybdate 0.25 M
+1.5
-0.1
-0.2
+0.1
N.D.
stress
5-Hydroxymethylfurfural 10 mM
+1.0
+0.2
+0.1
+0.1
N.D.
stress
molybdate 0.25 M
+1.7
+0.2
-0.3
-0.0
N.D.
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